PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G179049_P01 | ||||||||
Common Name | Zm.24865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 75aa MW: 8080.37 Da PI: 7.6177 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 52.2 | 2e-16 | 11 | 60 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k 49 lppGfrFhPtdeelvv yL++k+ +++l++ vi+ v d+ ++PwdLp + GRMZM2G179049_P01 11 LPPGFRFHPTDEELVVLYLRRKALARPLPA-AVIPVVhDVAGLDPWDLPgA 60 79****************************.8899998**********943 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-19 | 6 | 61 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 20.047 | 11 | 75 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-8 | 12 | 55 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MERPAQAPTQ LPPGFRFHPT DEELVVLYLR RKALARPLPA AVIPVVHDVA GLDPWDLPGA 60 CARALHLSAS TFGSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-14 | 2 | 58 | 6 | 61 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.24865 | 1e-127 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G179049 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G179049_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054682 | 1e-124 | BT054682.2 Zea mays full-length cDNA clone ZM_BFb0076H15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001307391.1 | 4e-35 | uncharacterized protein LOC107275227 | ||||
Swissprot | O22798 | 1e-20 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | A0A1D6ESW3 | 8e-34 | A0A1D6ESW3_MAIZE; NAC domain-containing protein 18 | ||||
TrEMBL | B6U3F1 | 8e-34 | B6U3F1_MAIZE; NAC domain-containing protein 18 | ||||
STRING | GRMZM2G179049_P02 | 2e-34 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 3e-14 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G179049_P01 |
Publications ? help Back to Top | |||
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