PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G178603_P01 | ||||||||
Common Name | LOC103627461, TCP16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 220aa MW: 22761.6 Da PI: 10.5719 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.8 | 1.1e-35 | 53 | 206 | 8 | 112 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec..eaesssssasnsssg...... 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a s++ +++ssss ++++ + GRMZM2G178603_P01 53 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSIVAATGSGTTPAvfvSSSapSTSSSSSHYHHQQ-Qatvvlg 143 59********************************************************99999444222322222222222222.2467777 PP TCP 89 .......................................kaaksaa.kskksqksaasalnlak 112 + a++aa + + + ++++lnl + GRMZM2G178603_P01 144 krpreegdaagsvfwaalpaaprateawgfspleaqaaaA-AAAAAyVPMAQAQAQHHHLNLLA 206 7777788888888888888877777777777777766532.22222233333333333444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.032 | 53 | 107 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 8.0E-32 | 53 | 138 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MATTREVSSS AAAMFHVYQT IPMPTPSTAA AGGGGAMVSV SAPAKPGKKE GGGKDRHSKV 60 NGRGRRVRMP IVCAARVFQL TRELGLKSDG QTIEWLLRQA EPSIVAATGS GTTPAVFVSS 120 SAPSTSSSSS HYHHQQQATV VLGKRPREEG DAAGSVFWAA LPAAPRATEA WGFSPLEAQA 180 AAAAAAAAYV PMAQAQAQHH HLNLLAALSG AARRAEEETR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G178603 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00655 | PBM | Transfer from LOC_Os02g42380 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G178603_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727699 | 0.0 | KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008645973.1 | 1e-157 | transcription factor TCP21 | ||||
Swissprot | Q9FMX2 | 9e-42 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A060D1M6 | 1e-155 | A0A060D1M6_MAIZE; TCP transcription factor (Fragment) | ||||
STRING | GRMZM2G178603_P01 | 1e-156 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-32 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G178603_P01 |
Entrez Gene | 103627461 |