PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G178261_P04 | ||||||||
Common Name | cl3497_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRF | ||||||||
Protein Properties | Length: 233aa MW: 24958.8 Da PI: 9.3503 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.6 | 2.4e-24 | 115 | 158 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e GRMZM2G178261_P04 115 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 158 69***************************************986 PP | |||||||
2 | QLQ | 58.5 | 2e-20 | 48 | 83 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+ +L++Q+l+yKyLaan P+P+ Ll +i++ GRMZM2G178261_P04 48 PFTPSQWIELEHQALIYKYLAANSPIPHSLLIPIRR 83 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.1E-11 | 47 | 83 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.975 | 48 | 83 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.7E-15 | 48 | 82 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.65 | 114 | 158 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-20 | 116 | 157 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MFLAAPCWLP PFCCSSLLTM PACLLPAGLS SVSLSTSMQG AMARVRAPFT PSQWIELEHQ 60 ALIYKYLAAN SPIPHSLLIP IRRSLAASPY PPSYFGTSTL GWGSFQLGYS GNADLEPGRC 120 RRTDGKKWRC SRDAVADQKY CERHMNRGRH RSRKHVEGQP GHAAKAMSAV AAAAAAAAQP 180 AALAGAGAPA AGLTVNQHQL PAKSYATGAT DPCSLQYNRY FLLLCLCSKC CNT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.41931 | 0.0 | ear| embryo| meristem| ovary| root| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G178261 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G178261_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063759 | 0.0 | BT063759.1 Zea mays full-length cDNA clone ZM_BFc0104G18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020408905.1 | 1e-137 | uncharacterized protein LOC100285734 isoform X1 | ||||
Swissprot | Q6AWY3 | 1e-89 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | C0P640 | 1e-158 | C0P640_MAIZE; Growth-regulating factor 2 | ||||
STRING | GRMZM2G178261_P01 | 1e-135 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-50 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G178261_P04 |
Publications ? help Back to Top | |||
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