PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G178261_P01
Common Namecl3497_1, GRF1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 593aa    MW: 61872.9 Da    PI: 7.0906
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G178261_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.89.2e-24214257245
                WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  GRMZM2G178261_P01 214 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 257
                        69***************************************986 PP

2QLQ56.87e-20147182237
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                        +FT++Q+ +L++Q+l+yKyLaan P+P+ Ll +i++
  GRMZM2G178261_P01 147 PFTPSQWIELEHQALIYKYLAANSPIPHSLLIPIRR 182
                        9*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.1E-11146182IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-14147181IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.975147182IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.65213257IPR014977WRC domain
PfamPF088795.0E-20215256IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MDLGGSVVMD AGASELGLLG GGSSRLLKHG RGPNAAGGDD DVWGGGRAKQ PRTGTAPVVA  60
GDVAAATKAA AAPFLLGSCS PGHGGEQMLS FSSAAAAAAA SCASSTAAAD GGGAMPLYYG  120
TPASCSGLSS VSLSTSMQGA MARVRAPFTP SQWIELEHQA LIYKYLAANS PIPHSLLIPI  180
RRSLAASPYP PSYFGTSTLG WGSFQLGYSG NADLEPGRCR RTDGKKWRCS RDAVADQKYC  240
ERHMNRGRHR SRKHVEGQPG HAAKAMSAVA AAAAAAAQPA ALAGAGAPAA GLTVNQHQLP  300
AKSYATGATD PCSLQYNREL VNKQNESENM QDSDNLSMLT SMNTGNTGSV FPFSKQNTNP  360
FEVTSSRLEF GLVSSDSLMS SPHSSLENVN LLGSQSMNEH QNPASLQHFV DWPRTPAQGG  420
LSWPEAEDMQ AQRSQLSISA PMASSELSSA STSPIHEKLM LSPLKLSREY SPTGLGIAAN  480
RDEASQLEAT WATMFRDSSM GGPLGEVLAK NGNVEARNYL SAPLNLLTDY WDSSHGMESS  540
PVGVLQKTTA FGSVSSSTGS SPRVENHGAY DGFGNLRDDL GSIVVRHPSI RLV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.419310.0ear| embryo| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G178261
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G178261_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670850.0BT067085.1 Zea mays full-length cDNA clone ZM_BFb0185D09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152097.10.0uncharacterized protein LOC100285734
SwissprotQ6AWY30.0GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLB6U8T20.0B6U8T2_MAIZE; GRF transcription factor
STRINGGRMZM2G178261_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Representative plantOGRP33571226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-47growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  4. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]