PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G178182_P01 | ||||||||
Common Name | LOC100194274 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 295aa MW: 30978.2 Da PI: 6.9143 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 6e-09 | 121 | 168 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka +L + ++Y++sLq GRMZM2G178182_P01 121 SHSLAERVRRERISERMRVLQALVPGC----DKVTGKALVLDEIINYVQSLQ 168 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-17 | 115 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.38E-11 | 115 | 172 | No hit | No description |
PROSITE profile | PS50888 | 15.447 | 117 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-16 | 117 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-6 | 121 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-9 | 123 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MEHGVAGASH GAPSFLFCNG AGAATADSAS LETSSGVLDT SPRGGGADSG GRKAPTKPRE 60 DSASASASFS FSSAHSKDSS SKGSTKNRGG KRGRSSKEVD EEEEPKGYIH VRARRGQATD 120 SHSLAERVRR ERISERMRVL QALVPGCDKV TGKALVLDEI INYVQSLQNQ VEFLSMKIAS 180 LSPVLYGFGM DTTDAFSTDH TTQKIEGMLQ LHHEALAVPS SALSRPPFEA IADSTHATAS 240 ASSPRSYELH GDGGGGGASI SFPQDGGGYM AQTVGGPRPE LFNQVVFSNH MCSFQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.119452 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G178182 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G178182_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036775 | 0.0 | BT036775.1 Zea mays full-length cDNA clone ZM_BFb0138L14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132785.1 | 0.0 | uncharacterized protein LOC100194274 isoform 1 | ||||
Refseq | NP_001317291.1 | 0.0 | uncharacterized protein LOC100194274 isoform 2 | ||||
TrEMBL | B4FI37 | 0.0 | B4FI37_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G178182_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 7e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G178182_P01 |
Entrez Gene | 100194274 |