PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G177974_P01
Common NameMYBR66, Zm.75832
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 565aa    MW: 63448.1 Da    PI: 7.8651
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G177974_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.87.8e-11111151445
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        W ++E+ ll+++++++G g+W  +a+++g +++  qc++++ 
  GRMZM2G177974_P01 111 WNADEEILLLEGIEMYGLGNWLEVAEHVG-TKSKLQCIDHYT 151
                        *****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250243.1E-17438560IPR016827Transcriptional adaptor 2
SMARTSM002911.6E-104792IPR000433Zinc finger, ZZ-type
PfamPF005693.2E-94990IPR000433Zinc finger, ZZ-type
SuperFamilySSF578501.88E-1451114No hitNo description
CDDcd023351.62E-255199No hitNo description
PROSITE profilePS5013510.8245194IPR000433Zinc finger, ZZ-type
PROSITE patternPS0135705380IPR000433Zinc finger, ZZ-type
SuperFamilySSF466893.59E-12104157IPR009057Homeodomain-like
PROSITE profilePS5129321.633106158IPR017884SANT domain
SMARTSM007175.0E-10107156IPR001005SANT/Myb domain
PfamPF002498.6E-11110151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-7111153IPR009057Homeodomain-like
CDDcd001671.00E-10111152No hitNo description
SuperFamilySSF466898.42E-21469554IPR009057Homeodomain-like
PROSITE profilePS509349.653474565IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MGRSRGVQNS GDDDTVHRSK RRRVASGGDA TDSVSAGIGG AGEGGGKKAL YHCNYCNKDI  60
SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYKVMD NLSFPLICPD WNADEEILLL  120
EGIEMYGLGN WLEVAEHVGT KSKLQCIDHY TTAYMNSPCY PLPDMSHVNG KNRKELLAMA  180
KVQGESKKGT SLLPGELTPK AESPFSPSRV KVEDALGEGL AGRSPSHIAV GANKKASNVG  240
HIKDGSNVSK VEDGHVDRSV GVKKPRYSAD EGPSLTELSG YNAKRHEFDP EYDNDAEQAL  300
AEMEFKETDS ETDRELKLRV LRIYLSRLDE RKRRKEFILE RNLLFPNPLE KDLTNEDREV  360
YHRYKVFMRF LSKEEHEALV RSVIEERKIR RRIQELQECR SAGCRTLAEA KIHIEQKRKK  420
EYELNAQKAK ESNHLIANTK LVQKMNRPMK IESDGNLDPK KGGVGLDSPK TTGLTSVKQW  480
DDWDIVGLPG AELLSASEKL LCCQNRLLPS HYLRMQEVLM QEIFKGSVLK KEDAHVLFKV  540
DPTKVDSVYD MVTKKLGNHV ELPTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C8e-38511665120Transcriptional adapter 2
6cw3_E9e-38511665120Transcriptional adapter 2
6cw3_G9e-38511665120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923KRRRV
2330335RKRRKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.758320.0ear| embryo| meristem| ovary| pericarp| pollen| shoot| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G177974
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G177974_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0413330.0BT041333.1 Zea mays full-length cDNA clone ZM_BFb0092G09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105146.20.0histone acetyltransferase complex component102
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLB4FW450.0B4FW45_MAIZE; Transcriptional adapter
STRINGGRMZM2G177974_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Representative plantOGRP2480912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]