PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G177693_P05
Common NameLOC100279632
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 433aa    MW: 46446.2 Da    PI: 8.0249
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G177693_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-053353323
                       ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                       C++Cgk F r  nL+ H r H
  GRMZM2G177693_P05 33 CEICGKGFQRDQNLQLHRRGH 53
                       *******************88 PP
2zf-C2H211.80.00075139157523
                        TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                        dCg++Fsr++++ +H   +
  GRMZM2G177693_P05 139 DCGTVFSRRDSFITHRAFC 157
                        9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.37E-83053No hitNo description
Gene3DG3DSA:3.30.160.603.7E-53053IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4893153IPR007087Zinc finger, C2H2
SMARTSM003550.0763153IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
SMARTSM0035513074104IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-497130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.37E-8104129No hitNo description
SMARTSM00355150109129IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDGLNMSSSS SDPEAEVVAL SPATLMATNR FLCEICGKGF QRDQNLQLHR RGHNLPWKLK  60
QRGAGKEAQR KKVYVCPEAS CVHHDPARAL GDLTGIKKHF FRKHGEKKWK CDKCSKRYAV  120
HSDWKAHSKI CGTREYKCDC GTVFSRRDSF ITHRAFCDAL TEESAKAIGG VNAMAAPVHH  180
HHHPMLFSPP PAHVMQQQDV LLLQEHQHHQ HQQQQQEDDV MQQPPPQQCN YAMKTEMPPW  240
PAMAYDHPLL QPLCNAAAAA AAQGSAATSA PQLPAASAHL SATALLQKAA QMGATIGGAG  300
YTQMAGPATS ATAAFGLGLP GLQNAQHHHP QQQDGGGGVM AAGLARTASS HGRGGDEGGG  360
GGSGDGMTRD FLGLRAFSHR DILGLAGLDS SCMGAITASA SMGCYEPQQQ HTQPQAPQQQ  420
QSSNEPWHGM GQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33105166364Zinc finger protein JACKDAW
5b3h_F2e-33105166364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.343190.0ear| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G177693
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G177693_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0546200.0BT054620.1 Zea mays full-length cDNA clone ZM_BFb0296L18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146100.10.0uncharacterized protein LOC100279632
SwissprotQ8H1F51e-108IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLB7ZZ780.0B7ZZ78_MAIZE; Uncharacterized protein
STRINGGRMZM2G177693_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-98indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]