PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G177693_P04 | ||||||||
Common Name | LOC100279632 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 480aa MW: 51258.5 Da PI: 8.2518 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.3e-05 | 80 | 100 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H GRMZM2G177693_P04 80 CEICGKGFQRDQNLQLHRRGH 100 *******************88 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00082 | 186 | 204 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + GRMZM2G177693_P04 186 DCGTVFSRRDSFITHRAFC 204 9**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.1E-7 | 77 | 100 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.2E-5 | 77 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.489 | 78 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.076 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 121 | 151 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.3E-4 | 144 | 177 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.1E-7 | 151 | 176 | No hit | No description |
SMART | SM00355 | 150 | 156 | 176 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MFHHQQELLQ AEAAAADRES SMSNNLTSSA PGGPNAAPAA AAATGNNNKR KRSLPGNPDP 60 EAEVVALSPA TLMATNRFLC EICGKGFQRD QNLQLHRRGH NLPWKLKQRG AGKEAQRKKV 120 YVCPEASCVH HDPARALGDL TGIKKHFFRK HGEKKWKCDK CSKRYAVHSD WKAHSKICGT 180 REYKCDCGTV FSRRDSFITH RAFCDALTEE SAKAIGGVNA MAAPVHHHHH PMLFSPPPAH 240 VMQQQDVLLL QEHQHHQHQQ QQQEDDVMQQ PPPQQCNYAM KTEMPPWPAM AYDHPLLQPL 300 CNAAAAAAAQ GSAATSAPQL PAASAHLSAT ALLQKAAQMG ATIGGAGYTQ MAGPATSATA 360 AFGLGLPGLQ NAQHHHPQQQ DGGGGVMAAG LARTASSHGR GGDEGGGGGS GDGMTRDFLG 420 LRAFSHRDIL GLAGLDSSCM GAITASASMG CYEPQQQHTQ PQAPQQQQSS NEPWHGMGQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-33 | 152 | 213 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 4e-33 | 152 | 213 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.34319 | 0.0 | ear| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G177693 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G177693_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT056151 | 0.0 | BT056151.1 Zea mays full-length cDNA clone ZM_BFb0048E20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008672711.1 | 0.0 | uncharacterized protein LOC100279632 isoform X1 | ||||
Swissprot | Q8H1F5 | 1e-114 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A096T152 | 0.0 | A0A096T152_MAIZE; Protein indeterminate-domain 9 | ||||
STRING | GRMZM2G177693_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-103 | indeterminate(ID)-domain 7 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G177693_P04 |
Entrez Gene | 100279632 |
Publications ? help Back to Top | |||
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