PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G177693_P02 | ||||||||
Common Name | LOC100279632 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 193aa MW: 21375.3 Da PI: 10.1615 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 80 | 100 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H GRMZM2G177693_P02 80 CEICGKGFQRDQNLQLHRRGH 100 *******************88 PP | |||||||
2 | zf-C2H2 | 11 | 0.0013 | 156 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + GRMZM2G177693_P02 156 WKCDKCSKRYAVHSDWKAHSKIC 178 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 77 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.43E-8 | 77 | 100 | No hit | No description |
PROSITE profile | PS50157 | 11.489 | 78 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.076 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 121 | 151 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.4E-4 | 144 | 177 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.43E-8 | 151 | 176 | No hit | No description |
SMART | SM00355 | 150 | 156 | 176 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MFHHQQELLQ AEAAAADRES SMSNNLTSSA PGGPNAAPAA AAATGNNNKR KRSLPGNPDP 60 EAEVVALSPA TLMATNRFLC EICGKGFQRD QNLQLHRRGH NLPWKLKQRG AGKEAQRKKV 120 YVCPEASCVH HDPARALGDL TGIKKHFFRK HGEKKWKCDK CSKRYAVHSD WKAHSKICGT 180 REYKCDCGTV FSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-21 | 152 | 193 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 7e-21 | 152 | 193 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.31196 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G177693 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G177693_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037903 | 0.0 | BT037903.1 Zea mays full-length cDNA clone ZM_BFb0201N10 mRNA, complete cds. | |||
GenBank | EU959573 | 0.0 | EU959573.1 Zea mays clone 218663 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008672711.1 | 1e-142 | uncharacterized protein LOC100279632 isoform X1 | ||||
Swissprot | Q9SCQ6 | 5e-91 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A096T152 | 1e-140 | A0A096T152_MAIZE; Protein indeterminate-domain 9 | ||||
TrEMBL | A0A3L6FBN9 | 1e-135 | A0A3L6FBN9_MAIZE; ATP-dependent zinc metalloprotease FTSH 5, mitochondrial | ||||
TrEMBL | B4FLB5 | 1e-142 | B4FLB5_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G177693_P01 | 1e-141 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 2e-90 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G177693_P02 |
Entrez Gene | 100279632 |
Publications ? help Back to Top | |||
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