PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G177244_P01
Common NameABI31
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 694aa    MW: 76588.8 Da    PI: 6.0403
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G177244_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.3e-1394181197
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        ffkv+    +++++ + +p +fa+++ ++   +   + led  g +W+v+l  + ++g   ++ GWk+Fv ++ +  g+f+vF+ + rs f 
  GRMZM2G177244_P01  94 FFKVM--LGYFSED-MDIPPPFAKTIwDLA--G-SNVFLEDAFGLRWRVRL--CLRDGVLSFGHGWKNFVLDHAVSCGEFLVFRQIARSVF- 176
                        77888..7888888.**********98444..2.26***************..88999999***********************9888888. PP

                        .EEEEE CS
                 B3  92 lvvkvf 97 
                         +v++f
  GRMZM2G177244_P01 177 -TVQMF 181
                        .77766 PP
2B333.85.9e-116206862997
                        -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        kk++ k ++l+d++ r W v +  + +++   + +GW + +++n++kegD++ F+l+g+se ++ ++v+
  GRMZM2G177244_P01 620 KKHGRKVVMLKDPRMRLWPVLY--QCTPRFNGIITGWVDVCRENRIKEGDTCEFELSGNSELSFQLQVR 686
                        3344568***************..66666666778**********************998887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-1891184IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-2091184IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.08391184IPR003340B3 DNA binding domain
CDDcd100171.69E-1592181No hitNo description
SMARTSM010193.1E-1194184IPR003340B3 DNA binding domain
PfamPF023623.1E-1094181IPR003340B3 DNA binding domain
PROSITE profilePS508639.841592687IPR003340B3 DNA binding domain
SMARTSM010190.0059595689IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-12609682IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-9611687No hitNo description
Gene3DG3DSA:2.40.330.105.5E-11620683IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-9621685IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MQPATDTEVV GGAVKKEPEE IVVEVDGDGD EEAEKVVKRR RRRRKKTTAW DPHKKRACVD  60
CTKRCARIHG QPASPSALAS SSSNARPVPA VPSFFKVMLG YFSEDMDIPP PFAKTIWDLA  120
GSNVFLEDAF GLRWRVRLCL RDGVLSFGHG WKNFVLDHAV SCGEFLVFRQ IARSVFTVQM  180
FAPSAVERLH LCERNKRQSR KRKPRPQRQR TSSPSIQTVK ATKNRVKNSN KKRQRTDDHQ  240
NGVRPRGHKS KTAAQVCVDD SDVPDPASEP KCPDTSERLP EAEVTEPQEI SEPPAGRHER  300
EAQKVLDGEA EVADDSAMLE ETETIYNARL TEHQVPAANE TEHGECLANF DASIPLAMMD  360
LNEVSIDDIF LSADTYEFGS DMCNPEPFSV GLNMEGTTTG QNSGFSCLEE LDTPQNHLSS  420
MGDGHCSLVP EAGPCTENNK EKADALETGA SYFCDSSFHD IDINALPAKE PPSFGEDSPS  480
PRAGAEMHPN ECGLSSCSQD RGNSSLLIIN KQAAHKESDS FMTTKQDKPQ GGQCSMQDGV  540
GRQHPTEITS RNAKPRESPE LTRNPLGTGT GSESTHSGTS ESGGLLALTE NITKFCIAVP  600
APGQTWLEIP GRLPVIPRTK KHGRKVVMLK DPRMRLWPVL YQCTPRFNGI ITGWVDVCRE  660
NRIKEGDTCE FELSGNSELS FQLQVRVPNT HPEC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742KRRRRR
23745KRRRRRRKK
33843RRRRRR
43945RRRRRKK
53955RRRRRKKTTAWDPHKKR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G177244
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G177244_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674686.10.0B3 domain-containing protein Os01g0905400 isoform X1
TrEMBLA0A1D6N4370.0A0A1D6N437_MAIZE; B3 domain-containing protein
STRINGGRMZM2G177244_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Representative plantOGRP89721014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-09B3 family protein