PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G177220_P01
Common NameZm.97951
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARR-B
Protein Properties Length: 584aa    MW: 65635.3 Da    PI: 4.8625
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G177220_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.78.5e-26195248155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  GRMZM2G177220_P01 195 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 248
                        68*******************.9*******************************8 PP
2Response_reg78.72.1e-26151231109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+p+ +++l+++l+k  y ev+++  ++ a+++l+e++  +D+++ D++mp+mdG++ll+ i  e  +lp+i+++  ge + + + +
  GRMZM2G177220_P01  15 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLASVAIQILRERRnkFDIVISDVNMPDMDGFKLLELIGLEM-DLPVIMMSIDGETSRVMKGV 104
                        89*********************.***************888888**********************6644.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        + Ga d+l Kp+ ++el++
  GRMZM2G177220_P01 105 QHGACDYLLKPVRMKELRN 123
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.3E-1652575IPR017053Response regulator B-type, plant
SuperFamilySSF521722.99E-3412136IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-4212146No hitNo description
SMARTSM004488.7E-3113125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.22114129IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-2315124IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.53E-2816128No hitNo description
SuperFamilySSF466893.31E-18192252IPR009057Homeodomain-like
PROSITE profilePS512949.161192251IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-28194253IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-22195248IPR006447Myb domain, plants
PfamPF002499.2E-8197247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MALTDATAFP YGLRVLVVDD DPTWLKILEK MLRKCSYEVT TCGLASVAIQ ILRERRNKFD  60
IVISDVNMPD MDGFKLLELI GLEMDLPVIM MSIDGETSRV MKGVQHGACD YLLKPVRMKE  120
LRNIWQHVYR KKMHEVKEIE GNDSYDDLQM FRNGVEGFDE RDLFMRADSD TMRKRKDVNK  180
DHADQDSSDG ATVKKARVVW SVDLHQKFVN AVNQIGFDKV GPKKILDLMN VPGLTRENVA  240
SHLQKYRLYL SRLQKQNEER IMGAARQDFN QKGPSDHLNL RSSFQEQPGN LSNGCQHSSQ  300
KVEAQTNILD PHLDDTKTSM PLKVPDKNGI SASDAVDPHN ITTASPLSGV FSFERMPVNQ  360
DRKLSETMIL ECESWSGSVP PKQFMQYPKH NHERCDLLGD YSCLPKPDLE HPIAPGHLYA  420
PPPVISMSYN VEKDVRDFSD VKPDLLGCMK SLSPALTCTV ESVSAQLSDS VVTSTNSDRK  480
FSSVEGLSSI KDCDFDQERN GAILFTSEEA SILCGTDFTC LPEDLSGYQL QGVSFGNKGL  540
NSIDLYQCND TMLIPGLQNN WYDDDVEFSS ETVEFPLLDG GLFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17194253463ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.979510.0cell culture| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G177220
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G177220_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9747740.0EU974774.1 Zea mays clone 457889 two-component response regulator ARR11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152300.10.0two-component response regulator ARR11
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A1D6N4420.0A0A1D6N442_MAIZE; Two-component response regulator
STRINGGRMZM2G177220_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-109response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]