PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G177046_P01 | ||||||||
Common Name | LOC103644073 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 185aa MW: 20188.1 Da PI: 11.0951 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.8 | 2e-12 | 68 | 121 | 1 | 54 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 e++l+r+rrk +NR++A+rsR+RK++++eeL+e ++ L ae ++L +l+ l GRMZM2G177046_P01 68 EERLRRQRRKVSNRLSAQRSRARKQQRLEELREAAARLRAEKQQLEARLQALAR 121 789**********************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.9E-10 | 63 | 121 | No hit | No description |
SMART | SM00338 | 9.5E-8 | 68 | 132 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.2E-8 | 68 | 120 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.001 | 70 | 133 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.03E-7 | 71 | 123 | No hit | No description |
CDD | cd14702 | 1.83E-11 | 73 | 122 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 75 | 90 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MLSVQEALDL ASSSCGTMDI TTCGFTPWGP ESCPSLEQVM ASRPAASSTA ALAEAEAEAA 60 RDADPEDEER LRRQRRKVSN RLSAQRSRAR KQQRLEELRE AAARLRAEKQ QLEARLQALA 120 RHDLAVRCQN ARLGAEASAL ARRFREARRL LALRRLAFAA LQPRPGVAPA PAPPAPLLGL 180 ASLMT |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G177046 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G177046_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957676 | 1e-164 | EU957676.1 Zea mays clone 1603335 ocs element-binding factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665488.1 | 1e-123 | ocs element-binding factor 1-like | ||||
TrEMBL | A0A1D6L661 | 1e-121 | A0A1D6L661_MAIZE; Ocs element-binding factor 1 | ||||
STRING | GRMZM2G177046_P01 | 1e-122 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13845 | 24 | 29 | Representative plant | OGRP12644 | 4 | 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G177046_P01 |
Entrez Gene | 103644073 |