PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G176677_P02
Common NameNAC120, pco143489(612)
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 408aa    MW: 44754.3 Da    PI: 5.0525
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G176677_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.5e-4961341129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtd el v+yLk+k+ gk+l++ ++i+e+d+yk+ PwdLp+  ++++++  wyfF++rd+ky++g r+nr+t  gyWkatgkd+
  GRMZM2G176677_P02   6 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAITEIDLYKFAPWDLPEraSLESNDLVWYFFCPRDRKYSSGLRTNRSTGVGYWKATGKDR 96 
                        79****************************.89***************52355556669********************************* PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        +v+  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  GRMZM2G176677_P02  97 PVVY-NSRTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 134
                        ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-603156IPR003441NAC domain
PROSITE profilePS5100555.126156IPR003441NAC domain
PfamPF023655.5E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KHLRCNAITE IDLYKFAPWD LPERASLESN  60
DLVWYFFCPR DRKYSSGLRT NRSTGVGYWK ATGKDRPVVY NSRTVGMKRT LVFHLGKPPR  120
GDRTDWVMYE YRLEDEEIAA SGVKLDACVL CKIFQKSGPG PKIGAQYGAP FNEEDWNDAS  180
NVECSPCVPS VAPCAPESSR GGLNSAGQRL AVSYDVKVSL GSSAEGINRP AVNGVHPVRP  240
SPDAPNDCIH IQLLAEVMRC SSTSMHVLRT AGDDGLLADS TADYSSDNRI SLDAIETIFC  300
EVDELGPQAM VNNTNHCDSC GEYLIHPTMV ARGAEQYLEL NDLSFSLTDG PDSCGVLFSN  360
GVSVEQLPDL ELRFEQFSPD HISNTAIAST STTVGSSASV PLLEDHRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-53215711169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.660360.0ear| endosperm| glume| meristem| ovary| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G176677
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G176677_P02
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683710.0BT068371.1 Zea mays full-length cDNA clone ZM_BFb0135E15 mRNA, complete cds.
GenBankBT0685320.0BT068532.1 Zea mays full-length cDNA clone ZM_BFb0292O13 mRNA, complete cds.
GenBankBT0839010.0BT083901.1 Zea mays full-length cDNA clone ZM_BFb0052I14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169920.10.0uncharacterized protein LOC100383817
RefseqXP_008668454.10.0ras-related protein18A1 isoform X1
TrEMBLC0PJA20.0C0PJA2_MAIZE; NAC transcription factor
STRINGGRMZM2G176677_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.42e-80NAC domain containing protein 82