PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G176677_P01
Common NameNAC120, pco143489(612)
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 408aa    MW: 44754.3 Da    PI: 5.0525
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G176677_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.5e-4961341129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtd el v+yLk+k+ gk+l++ ++i+e+d+yk+ PwdLp+  ++++++  wyfF++rd+ky++g r+nr+t  gyWkatgkd+
  GRMZM2G176677_P01   6 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAITEIDLYKFAPWDLPEraSLESNDLVWYFFCPRDRKYSSGLRTNRSTGVGYWKATGKDR 96 
                        79****************************.89***************52355556669********************************* PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        +v+  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  GRMZM2G176677_P01  97 PVVY-NSRTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 134
                        ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-603156IPR003441NAC domain
PROSITE profilePS5100555.126156IPR003441NAC domain
PfamPF023655.5E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005525Molecular FunctionGTP binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KHLRCNAITE IDLYKFAPWD LPERASLESN  60
DLVWYFFCPR DRKYSSGLRT NRSTGVGYWK ATGKDRPVVY NSRTVGMKRT LVFHLGKPPR  120
GDRTDWVMYE YRLEDEEIAA SGVKLDACVL CKIFQKSGPG PKIGAQYGAP FNEEDWNDAS  180
NVECSPCVPS VAPCAPESSR GGLNSAGQRL AVSYDVKVSL GSSAEGINRP AVNGVHPVRP  240
SPDAPNDCIH IQLLAEVMRC SSTSMHVLRT AGDDGLLADS TADYSSDNRI SLDAIETIFC  300
EVDELGPQAM VNNTNHCDSC GEYLIHPTMV ARGAEQYLEL NDLSFSLTDG PDSCGVLFSN  360
GVSVEQLPDL ELRFEQFSPD HISNTAIAST STTVGSSASV PLLEDHRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-53215711169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.660360.0ear| endosperm| glume| meristem| ovary| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G176677
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G176677_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683710.0BT068371.1 Zea mays full-length cDNA clone ZM_BFb0135E15 mRNA, complete cds.
GenBankBT0685320.0BT068532.1 Zea mays full-length cDNA clone ZM_BFb0292O13 mRNA, complete cds.
GenBankBT0839010.0BT083901.1 Zea mays full-length cDNA clone ZM_BFb0052I14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169920.10.0uncharacterized protein LOC100383817
RefseqXP_008668454.10.0ras-related protein18A1 isoform X1
TrEMBLC0PJA20.0C0PJA2_MAIZE; NAC transcription factor
STRINGGRMZM2G176677_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148561721
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.42e-80NAC domain containing protein 82