PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G176655_P01

Common Name

LOC100381753, NLP8

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Nin-like

Protein Properties

Length: 873aa MW: 97633.4 Da PI: 7.6396

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G176655_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.4	5e-27	515	565	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sle++++yF +++k+AAk+Lgvc+T++KriCRq+GI+RWP+R+i+++ GRMZM2G176655_P01 515 EKTFSLEVIQQYFTGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRQISKV 565 7899********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.972	503	585	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-24	518	565	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.65E-22	772	864	No hit	No description
PROSITE profile	PS51745	20.444	779	861	IPR000270	PB1 domain
SMART	SM00666	3.9E-25	779	861	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	9.0E-25	780	860	No hit	No description
CDD	cd06407	5.37E-30	780	860	No hit	No description
Pfam	PF00564	5.3E-18	780	860	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence Send to blast
MAATLGCSTP CPRRSTFRPF RPRCRRRGRA ATRIILPCGW TRLPCKTTAR ASPPEKLTVA 60 LMYFKESTKQ HLLVQVWVPI RKGDHYMLST SGQPFVLDEQ SIGLLDYRAV SMMYTFAVDG 120 DSVEELGLPG RVYKQRLPEW TPDVQYYSSI EYARLNHAIS YDVHGTVALP VFDSSMKSCI 180 AVVELIMTSK KVNYAREVGE VSKALEAVNL KSTEVIEHPY VQIFNEGHQN VLVEMLEIIT 240 VICEELKLPI AQTWVPCKYQ NLLIHCGGEN KSCFDIHESC AQELCMSTSA VMFHIIDAHM 300 WGFRDACVEH HLKKGQGVSG KAFILRRPCF TKDVTRFSKM EYPLVHYARM FGLAGCFSIC 360 LQSAYNRNED YVLEFFLPPD CREDGEQKVL LDSILALLRQ YLNRLQVATD EGSNEVYLQV 420 DAITIIENGD IKNAHVQHMN CEGGIHASDE RNMHVIHESD SQKRISPTES ETCPSPDNTK 480 CNDKLFARQN GGCISDSLLL ENNSKHSGRR QGKEEKTFSL EVIQQYFTGS LKNAAKSLGV 540 CPTTMKRICR QHGISRWPSR QISKVNRTVS KLKKVIESVE GHEGAFTLTS VTGPLPVAFG 600 PSNPISIKNQ SQINVSGLPI PSVQENRDSS SQSKLLENDI HRSTLVPQKS FLANINRQIE 660 AEKASNSRNS SKDCRTHSGR SEESYPVSPA NMTFVSTLLE PQQNMYIQDG FTKESFQKED 720 LRFHGMFVNG SGSLKDCMNH ITSAVNGTII GHPGSLTTAQ NSGIITCPGS LISAQNSRIV 780 TVKARYKEDL LRFRFPCSGS FITLKDEVAK RIQMDGVLFD IKYLDDDHEW VKLTCDTDLE 840 ECMEISRASG SNVLRLLVTD IAPVLGSSCG STG

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence Send to blast

MAATLGCSTP CPRRSTFRPF RPRCRRRGRA ATRIILPCGW TRLPCKTTAR ASPPEKLTVA  60
LMYFKESTKQ HLLVQVWVPI RKGDHYMLST SGQPFVLDEQ SIGLLDYRAV SMMYTFAVDG  120
DSVEELGLPG RVYKQRLPEW TPDVQYYSSI EYARLNHAIS YDVHGTVALP VFDSSMKSCI  180
AVVELIMTSK KVNYAREVGE VSKALEAVNL KSTEVIEHPY VQIFNEGHQN VLVEMLEIIT  240
VICEELKLPI AQTWVPCKYQ NLLIHCGGEN KSCFDIHESC AQELCMSTSA VMFHIIDAHM  300
WGFRDACVEH HLKKGQGVSG KAFILRRPCF TKDVTRFSKM EYPLVHYARM FGLAGCFSIC  360
LQSAYNRNED YVLEFFLPPD CREDGEQKVL LDSILALLRQ YLNRLQVATD EGSNEVYLQV  420
DAITIIENGD IKNAHVQHMN CEGGIHASDE RNMHVIHESD SQKRISPTES ETCPSPDNTK  480
CNDKLFARQN GGCISDSLLL ENNSKHSGRR QGKEEKTFSL EVIQQYFTGS LKNAAKSLGV  540
CPTTMKRICR QHGISRWPSR QISKVNRTVS KLKKVIESVE GHEGAFTLTS VTGPLPVAFG  600
PSNPISIKNQ SQINVSGLPI PSVQENRDSS SQSKLLENDI HRSTLVPQKS FLANINRQIE  660
AEKASNSRNS SKDCRTHSGR SEESYPVSPA NMTFVSTLLE PQQNMYIQDG FTKESFQKED  720
LRFHGMFVNG SGSLKDCMNH ITSAVNGTII GHPGSLTTAQ NSGIITCPGS LISAQNSRIV  780
TVKARYKEDL LRFRFPCSGS FITLKDEVAK RIQMDGVLFD IKYLDDDHEW VKLTCDTDLE  840
ECMEISRASG SNVLRLLVTD IAPVLGSSCG STG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.104198	0.0	meristem\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G176655

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G176655_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062177	0.0	BT062177.1 Zea mays full-length cDNA clone ZM_BFb0224E14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001168027.1	0.0	uncharacterized protein LOC100381753
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	C0HIM1	0.0	C0HIM1_MAIZE; NLP transcription factor
STRING	GRMZM2G176655_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	GRMZM2G176655_P01
Entrez Gene	100381753