PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G176537_P01
Common NameZEAMMB73_278895, Zm.147296
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 494aa    MW: 52101.9 Da    PI: 5.5598
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G176537_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS256.11.2e-78944911374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselas.pdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                        l +lLl+ + a +sgd+++a a+L +   +as  +gdp qR+aayf+ ALa+rl++         +p +t+    +e++ a+++f+++sPi+
  GRMZM2G176537_P01  94 LMHLLLSSVAAAESGDAREAAAALREACRRASfRSGDPAQRVAAYFADALASRLVG---------RPPPTR----AEQFLAYTMFYQASPIY 172
                        5799*********************99999772566********************.........555554....688999*********** PP

               GRAS  92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg............ppslRiTgvgspesgskeeleetgerLakfAe 170
                        +++h+taNqaIlea+e+   r+H++Dfd+s+G+QWp+L+q+L++ +++            p slRiTg+g     s++el++t+ rLa+fA+
  GRMZM2G176537_P01 173 QLAHFTANQAILEAFESGgGRLHVVDFDVSYGFQWPSLMQSLSDAAAStssssrdgdcaePVSLRITGFGT----SADELRQTEARLARFAS 260
                        ****************9889**********************98773334556777777577*********....9***************9 PP

               GRAS 171 el.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadh.nse.... 251
                         + +++fef+  +++  +d   e++ v+ g +++Vnlv+      + + s++         + L  ++sl P +v +ve+     n++    
  GRMZM2G176537_P01 261 GCpNLRFEFEG-IVDGADDS--ERITVDDGATVVVNLVFPAAAAAAARSSSATsstreGACSALARIRSLDPSLVFLVEKGGGGgNATsrgr 349
                        8769*******.58866665..9***************9776655332222221222256689*****************977734437778 PP

               GRAS 252 ..sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr..........erhetlekWrerleeaGFkpvplse 331
                          s+l+ f+ +l+y++a+fdsl++ lp++s er  +Er  lg ei+++va   + +              +   +Wr+++e+aGF+ v+ls+
  GRMZM2G176537_P01 350 rpSLLAPFAASLRYFAAVFDSLHERLPADSAERLAIERDHLGAEISDAVASLADYSSssyggddepsSSATAGCSWRQMMERAGFEGVELSS 441
                        889**********************************************97554433111111100033444568***************** PP

               GRAS 332 kaakqaklllrkvk..sdgyrveee..sgslv.lgWkd..rpLvsvSaWr 374
                        +a++qaklll++ +  + g+rv ee   g +v lgW+d   +L++++ Wr
  GRMZM2G176537_P01 442 RAVSQAKLLLKMKSgcGGGFRVVEEgdGGRAVsLGWRDgrAQLITATGWR 491
                        ***********99976677***98865555666***98335799999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.4668464IPR005202Transcription factor GRAS
PfamPF035144.3E-7694491IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0025287anatomyseedling coleoptile
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MNLTLSLAIN DGGGGGTTKK RKLLRDSADD DVMSRDGGGD RSSRVVARLV QVQARERKLA  60
KLEAAAADDD DHDHDPRVAA AETSPGDIGG GLRLMHLLLS SVAAAESGDA REAAAALREA  120
CRRASFRSGD PAQRVAAYFA DALASRLVGR PPPTRAEQFL AYTMFYQASP IYQLAHFTAN  180
QAILEAFESG GGRLHVVDFD VSYGFQWPSL MQSLSDAAAS TSSSSRDGDC AEPVSLRITG  240
FGTSADELRQ TEARLARFAS GCPNLRFEFE GIVDGADDSE RITVDDGATV VVNLVFPAAA  300
AAAARSSSAT SSTREGACSA LARIRSLDPS LVFLVEKGGG GGNATSRGRR PSLLAPFAAS  360
LRYFAAVFDS LHERLPADSA ERLAIERDHL GAEISDAVAS LADYSSSSYG GDDEPSSSAT  420
AGCSWRQMME RAGFEGVELS SRAVSQAKLL LKMKSGCGGG FRVVEEGDGG RAVSLGWRDG  480
RAQLITATGW RRCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4010349027378Protein SCARECROW
5b3h_A5e-4010349026377Protein SCARECROW
5b3h_D5e-4010349026377Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G176537
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G176537_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432544e-77AC243254.2 Panicum virgatum clone PV_ABa094-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663206.10.0scarecrow-like protein 23
TrEMBLK7UIJ30.0K7UIJ3_MAIZE; Protein SCARECROW
STRINGGRMZM2G176537_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Representative plantOGRP81961117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.12e-37GRAS family protein