PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G176489_P01
Common NameLOC103649651, Zm.127363
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 547aa    MW: 56206.6 Da    PI: 6.9147
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G176489_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.41.3e-27288346259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed++v+++tY   Hnh+
  GRMZM2G176489_P01 288 PDGCQWRKYGQKISKGNPCPRAYYRCTVApHCPVRKQVQRCAEDTSVLITTYDCAHNHP 346
                        69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-29272348IPR003657WRKY domain
SuperFamilySSF1182909.15E-25280348IPR003657WRKY domain
PROSITE profilePS5081126.911282348IPR003657WRKY domain
SMARTSM007742.8E-31287347IPR003657WRKY domain
PfamPF031061.0E-23289346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MEVAVVESPR PPPPPPQAKE EKRSDATKPE IAASMVGSAL PIVFESFPST QREAAAAGVK  60
QEERRLEAAR AEMGEVREEN ERLKSMLSRI VGQYQSLQTH FLDVVKVREL ASSSAKAAAE  120
NKIPAAPALL PGTDDGDEPY DDLVSLSLGT RANSSGGGPR RKGHDDRSAS SSGTADEMPN  180
TADDERRHQI SLGLGFARGL PPSGTAAAAD DDKASHDAST APVLNLSSDS SGSAGDTDTT  240
KPALAAAGAA RKSPSAGAGD GSADDEVQQQ AKKARVSVRV KCDTPTMPDG CQWRKYGQKI  300
SKGNPCPRAY YRCTVAPHCP VRKQVQRCAE DTSVLITTYD CAHNHPLPPA ATAMASTTSA  360
AVAMLTYGST TSAASASLVH GHQYHSLAAA AGLLGPTTMV STAASCPTIT LDLTSPAAPH  420
SLVHSSLPYA AAAAAAAAGF ESKAVPAAWS SGYLAYGGAH PSYDTKISSA LGHLFGGSLG  480
VPSRPEQLYA QSYLQRANSL GDGHGAVAPA VTDTLAKAIT SDPSFQSVLA AAITSVMGRG  540
GAAATQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19274350176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271280KKARVSVRVK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G176489
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G176489_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9663570.0EU966357.1 Zea mays clone 293867 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673604.10.0probable WRKY transcription factor 72
TrEMBLA0A1D6MI100.0A0A1D6MI10_MAIZE; Putative WRKY transcription factor 36
STRINGGRMZM2G176489_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-47WRKY DNA-binding protein 72