PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G176289_P02 | ||||||||
Common Name | bHLH11, LOC100273484, ZEAMMB73_385296 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 342aa MW: 35826.6 Da PI: 8.5574 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.7e-09 | 153 | 200 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + sk Ka +L + ++Y++sLq GRMZM2G176289_P02 153 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 200 8*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 33 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-16 | 147 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.89E-10 | 147 | 204 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.6E-16 | 149 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.491 | 149 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-6 | 153 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-9 | 155 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MARCRGTAES LCQGRLDLDD DKFGAMCTTA FGCLQEWPDL GAMCGANLGV PAMAGNGNES 60 SCSGSGGSRK RKPDAYDGLD ATGGANDMSK RPRGKRLSGI SEIVAPGKGK QERPKAGTKK 120 KAEAASAAAA AAAAGHKTDY IHVRARRGQA TDSHSLAERV RRERISERMR YLQELVPGCS 180 KVTGKAGMLD EIINYVQSLQ KQVEFLSMKI AASNPVVSFD IVEDLFGRQL KQSRRSPAAA 240 LPAMALPAGQ LEPSCLQMSH MPQMHPSAAA NSTGFGLDMV VNNPYAPAGA SCPVSAAASV 300 SVAAGPSTTE PCLNVNGTAA WDIGSRNLFS GFVAQFQSVE SE |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.100150 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G176289 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G176289_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT041238 | 0.0 | BT041238.1 Zea mays full-length cDNA clone ZM_BFc0191L13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141393.1 | 0.0 | uncharacterized protein LOC100273484 | ||||
TrEMBL | B4FVV0 | 0.0 | B4FVV0_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G176289_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34530.1 | 6e-36 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G176289_P02 |
Entrez Gene | 100273484 |