PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G176289_P01
Common NameLOC100273484, ZEAMMB73_385296
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 352aa    MW: 37037.1 Da    PI: 8.4858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G176289_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09153200455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  GRMZM2G176289_P01 153 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 200
                        8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576133No hitNo description
SuperFamilySSF474591.83E-16147214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.32E-10147204No hitNo description
PROSITE profilePS5088815.491149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-16149211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MARCRGTAES LCQGRLDLDD DKFGAMCTTA FGCLQEWPDL GAMCGANLGV PAMAGNGNES  60
SCSGSGGSRK RKPDAYDGLD ATGGANDMSK RPRGKRLSGI SEIVAPGKGK QERPKAGTKK  120
KAEAASAAAA AAAAGHKTDY IHVRARRGQA TDSHSLAERV RRERISERMR YLQELVPGCS  180
KVTGKAGMLD EIINYVQSLQ KQVEFLSMKI AASNPVVSFD IVEDLFGRQL KQSRRSPAAA  240
LPAMALPAGQ LEPSCLQMSH MPQMHPSAAA NSTGFGLDMV VNNPYAPAGA SCPVSAAASV  300
SVAAGPSTTE PCLNVNGTAA WDIGSRNLFS GFVAQFQSVE SDCLLNNFKM EM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1001500.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G176289
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G176289_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0412380.0BT041238.1 Zea mays full-length cDNA clone ZM_BFc0191L13 mRNA, complete cds.
GenBankKJ7279450.0KJ727945.1 Zea mays clone pUT6041 bHLH transcription factor (bHLH11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141393.10.0uncharacterized protein LOC100273484
TrEMBLB4FVV00.0B4FVV0_MAIZE; BHLH transcription factor
STRINGGRMZM2G176289_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.17e-36cryptochrome-interacting basic-helix-loop-helix 1