PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G176173_P01
Common NameLOC100383826, Orphan319, ZEAMMB73_523515
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CO-like
Protein Properties Length: 279aa    MW: 28455.3 Da    PI: 6.019
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G176173_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.8e-061557542
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        C+ ++   +  +C  +   lC  C  + H        H++vpl
  GRMZM2G176173_P01 15 ACAVCGGA-AVVYCVADAAALCSPCDAAVHAAnllasrHERVPL 57
                       6******9.*********************66899999999986 PP
2CCT66.95.6e-23174217144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKrk+R+F K+irY+sRKa+Ae RpR+KGrFvk+a
  GRMZM2G176173_P01 174 REARVQRYREKRKNRRFHKTIRYASRKAYAEARPRIKGRFVKRA 217
                        9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-111157IPR000315B-box-type zinc finger
PROSITE profilePS501199.2431657IPR000315B-box-type zinc finger
CDDcd000212.21E-62657No hitNo description
PfamPF062038.6E-18174216IPR010402CCT domain
PROSITE profilePS5101716.589174216IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGGEGSTSPA PGGAACAVCG GAAVVYCVAD AAALCSPCDA AVHAANLLAS RHERVPLSMA  60
AVPSASGAYD DLFAPDDVDA AAPAQAQGLG SPRNGSSSAS FTTSGDSGAE GSSLFDFDLL  120
SGVDLAACVT DGVAPLHHDD AAPLWAQPGL AVAWATAWSP ADSAAAVVAA AAEREARVQR  180
YREKRKNRRF HKTIRYASRK AYAEARPRIK GRFVKRAAGT SSSSSSGAGT PDDGNDATGA  240
AAKFWLSFSD DARDGFYVDA GAYGVVPSFY RVRSEQLTS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G176173
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G176173_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683900.0BT068390.1 Zea mays full-length cDNA clone ZM_BFb0159K08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169929.10.0uncharacterized protein LOC100383826
TrEMBLC0PJC10.0C0PJC1_MAIZE; Orphans transcription factor
STRINGGRMZM2G176173_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Representative plantOGRP1297945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-16CONSTANS-like 5