PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G176141_P01 | ||||||||
Common Name | LOC100279487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 36483.5 Da PI: 5.0566 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.9 | 8.7e-14 | 112 | 158 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++ +++k+L GRMZM2G176141_P01 112 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVLDHVKEL 158 78*************************9.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.628 | 109 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-11 | 112 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.56E-12 | 112 | 161 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 113 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-14 | 113 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-13 | 115 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 7.0E-5 | 216 | 263 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MWDGGVEHGS QEAAHQLLPW LGAAPFSEPA AVAGLGAAMG AYACDGVGGL GHGGVFGFGF 60 DAAVQQQQQQ QRAADGSGKA VVVSGLLGSL QAELGRMTAR EMMDAKALAA SRSHSEAERR 120 RRQRINGHLA RLRSLLPNTT KTDKASLLAE VLDHVKELKR QTSAMMAATD ADADADDEGA 180 GRTQAQAQAQ LLPTEADELC VDAGADGAGR LVVRASLCCE DRPDLIPDIV RALAALQMRA 240 RRAEITTLGG RVRSLLLITA DRRADVQRGG GGGGGDGDDD EEEEDEEEGG ERAASHRRHE 300 CIASVQEALR GVMDRRTASS CDTSSSGGGG GSIKRQRMNY GAQEQCSV |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G176141 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G176141_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971189 | 0.0 | EU971189.1 Zea mays clone 359116 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001347905.1 | 0.0 | uncharacterized protein LOC100279487 | ||||
TrEMBL | A0A1D6EPT7 | 0.0 | A0A1D6EPT7_MAIZE; Transcription factor AIG1 | ||||
TrEMBL | A0A3L6G0U5 | 0.0 | A0A3L6G0U5_MAIZE; Transcription factor bHLH30 | ||||
STRING | GRMZM2G176141_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G176141_P01 |
Entrez Gene | 100279487 |