PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G176063_P01 | ||||||||
Common Name | LOC103650524, Zm.21747 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 341aa MW: 35046.1 Da PI: 8.7446 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.6 | 5.6e-38 | 109 | 166 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCds+ntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s GRMZM2G176063_P01 109 TLRCPRCDSANTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 166 679***************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-31 | 91 | 164 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.273 | 110 | 164 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-31 | 110 | 164 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 112 | 148 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MVFSSLPIFL DPPNWGQMHM QQQQPLQCLL DGGAGSDHHH LMPPPSCLAP LRGGPADTAA 60 SAPAGGGSST SVPTTAGAGA GAGATQPRPV VSMAERARLV RVPLPEPGTL RCPRCDSANT 120 KFCYFNNYSL SQPRHFCKAC RRYWTRGGAL RNVPVGGGCR RNTKRSSKKS SRGGGAGATA 180 ATSSSSTTST STTATTTTTS AAMAAAEAIA SMQAQLPHLG LPPAAAAAAL EASLEGYHHH 240 YLPLQMQPQF LQQAGLHGYH FADDGSGVLA DGFPRGVVAS GLLAQLAAVK MEEHSSNGGG 300 AVTAHQQEQS YSYWPGSTGG GSGWPAEFLS GFSSSSSGNV L |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.21747 | 0.0 | ear| meristem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G176063 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G176063_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC582419 | 0.0 | KC582419.1 Sorghum bicolor dof28 protein (dof28) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001333768.1 | 0.0 | uncharacterized protein LOC103650524 | ||||
TrEMBL | A0A1D6MWU5 | 0.0 | A0A1D6MWU5_MAIZE; Dof zinc finger protein DOF2.2 | ||||
STRING | GRMZM2G176063_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G02460.1 | 1e-38 | Dof family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G176063_P01 |
Entrez Gene | 103650524 |