PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G175480_P01 | ||||||||
Common Name | ZEAMMB73_900801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 358aa MW: 40270.3 Da PI: 9.1987 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.2 | 3e-13 | 263 | 310 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h Er+RR+++N++f Lr++lP++ K +Ka++L +A +Y++ Lq GRMZM2G175480_P01 263 QQHVLSERKRREKLNDSFKALRTVLPPS-----SKKDKASTLMRARDYVSTLQ 310 568999********************98.....699***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.40E-12 | 258 | 314 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-17 | 258 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.288 | 260 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 263 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-11 | 263 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.5E-14 | 266 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MDGGSSWLPF LGRGIGDGVS GSSGSEVQRK EDDDLPISSQ VEEELRQAMI MHARTLVICN 60 CFTFFFYLLM GMERTGHPAE RETTTALPPS SESSMFRSFP GSPADEASSL RPRSSNNNST 120 TANSYHHHPA EVSSQSHLTE LSPVTYGGGH RHCDDHQCYV NLDTILKLDD EFKRCHDEQP 180 HNERAQHKNG FRGGAFVPYT RHLGPKKKPK PPAGSGGQRA IKAAMAALAR MHMVRLAQWQ 240 CYQMELVVAP APPTGGINGN NQQQHVLSER KRREKLNDSF KALRTVLPPS SKKDKASTLM 300 RARDYVSTLQ SRVSELEEKN RMMLVQLQHR RNDVSPNKIE VDIRSNREEI RKHDRNFT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 268 | 273 | ERKRRE |
2 | 269 | 274 | RKRREK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G175480 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G175480_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656207.1 | 0.0 | uncharacterized protein LOC103635561 isoform X2 | ||||
TrEMBL | A0A3L6DVJ6 | 0.0 | A0A3L6DVJ6_MAIZE; Putative transcription factor bHLH041 | ||||
STRING | GRMZM2G175480_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2900 | 31 | 82 | Representative plant | OGRP19962 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 3e-18 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G175480_P01 |