PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G175232_P01
Common NameLOC100382234, Zm.36608
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 313aa    MW: 33296.9 Da    PI: 5.3685
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G175232_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-162067148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l++ + ++G g+W+t+++  g+ R++k+c++rw +yl
  GRMZM2G175232_P01 20 KGLWSPEEDEKLYNHIIRHGVGCWSTVPKLAGLQRCGKSCRLRWINYL 67
                       678*******************************************97 PP
2Myb_DNA-binding52.61.1e-1673117147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++ 
  GRMZM2G175232_P01  73 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 117
                        899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-231570IPR009057Homeodomain-like
PROSITE profilePS5129417.4181567IPR017930Myb domain
SuperFamilySSF466896.74E-2917114IPR009057Homeodomain-like
SMARTSM007172.9E-121969IPR001005SANT/Myb domain
PfamPF002491.5E-142067IPR001005SANT/Myb domain
CDDcd001672.49E-112367No hitNo description
PROSITE profilePS5129426.03868122IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2671122IPR009057Homeodomain-like
SMARTSM007172.5E-1672120IPR001005SANT/Myb domain
PfamPF002496.6E-1573117IPR001005SANT/Myb domain
CDDcd001671.16E-1175115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRLSCGGGG GGGVQPKLRK GLWSPEEDEK LYNHIIRHGV GCWSTVPKLA GLQRCGKSCR  60
LRWINYLRPD LKRGSFSQQE EDLIVALHEI LGNRWSQIAS HLPGRTDNEI KNFWNSCLKK  120
KLRQRGIDPA THKPVAAAEA SAALPDARDH DREPGGAGAG ADADGLAQQS KQPAAAVFDP  180
FPVVDFGFDL SGGGGVAALY GGPYDAAAGK ASADDGGFVA DYSSVLDVSE NLGYGESSSN  240
SSNWGNGAEM GNAAAAVLDG EVLHWAKPEP YTELEQRSAG QAAADDDALH HRFLLPCGQE  300
QSLAHLDFGL EYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-29412211128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123LKKKLRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.366080.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G175232
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G175232_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635970.0BT063597.1 Zea mays full-length cDNA clone ZM_BFc0084D02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168460.10.0uncharacterized LOC100382234
SwissprotP200271e-113MYB3_HORVU; Myb-related protein Hv33
TrEMBLC0P5M80.0C0P5M8_MAIZE; Uncharacterized protein
STRINGGRMZM2G175232_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-73myb domain protein 86