PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G175000_P01
Common NameC2H4, LOC100216676
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 382aa    MW: 42830.4 Da    PI: 7.9508
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G175000_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-0593115323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        C+  +Cgk+F + s L++H ++H
  GRMZM2G175000_P01  93 CSyeNCGKTFVDVSALRKHASVH 115
                        77779**************9998 PP
2zf-C2H220.41.4e-06120144123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y C+  +Cgk F ++s LkrH  tH
  GRMZM2G175000_P01 120 YICNepNCGKKFVDSSKLKRHYLTH 144
                        899999****************999 PP
3zf-C2H2201.9e-06150174123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++Cp   Cgk Fs   nL++H++tH
  GRMZM2G175000_P01 150 FVCPhpGCGKAFSLDFNLRSHLKTH 174
                        89**********************9 PP
4zf-C2H217.21.5e-05243268123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        y+Cp   C+k + +++ L+ H++t H
  GRMZM2G175000_P01 243 YVCPyeGCDKAYIHSYKLNLHLKTqH 268
                        99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-1186115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.75991120IPR007087Zinc finger, C2H2
SMARTSM003550.01191115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
SuperFamilySSF576673.42E-994144No hitNo description
Gene3DG3DSA:3.30.160.601.1E-13116140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0013120144IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.295120149IPR007087Zinc finger, C2H2
PROSITE patternPS000280122144IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-12131183No hitNo description
Gene3DG3DSA:3.30.160.604.7E-19141175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.926150179IPR007087Zinc finger, C2H2
SMARTSM003558.3E-4150174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152174IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-7178204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.11180204IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515180209IPR007087Zinc finger, C2H2
PROSITE patternPS000280182204IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-6236268No hitNo description
Gene3DG3DSA:3.30.160.604.8E-10239268IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0036243268IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85243276IPR007087Zinc finger, C2H2
PROSITE patternPS000280245268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEYPATAAGS GSHKYYYPQQ HSHSQPQALR RPPRPAARWV KQWIPQDLAS SGGKCSLFKW  60
VREDGYRNSK DNPRVLDVEA PKPEPTTEIL FLCSYENCGK TFVDVSALRK HASVHNEKQY  120
ICNEPNCGKK FVDSSKLKRH YLTHTGQKDF VCPHPGCGKA FSLDFNLRSH LKTHALENYH  180
ICPFPACGKR FTSDFKLGAH VKSHEKTGTP IAVQHAPAPP AEKPRVAPKP PTPATTSYAD  240
RPYVCPYEGC DKAYIHSYKL NLHLKTQHPE HGQEENGKVG ASGGQHAANE HTYQYNYAEV  300
GEIAPNPKRS KTNHGHKVHS SKAYNAKVSR AMPSDIGVRN QWPGKATYQD DSEETEEDGG  360
NNIEDGWRYG NNDDDEETPD ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-31932068119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.264440.0cell culture| ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G175000
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G175000_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0371600.0BT037160.1 Zea mays full-length cDNA clone ZM_BFb0157B04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136556.10.0uncharacterized protein LOC100216676
TrEMBLA0A3L6EAM60.0A0A3L6EAM6_MAIZE; Putative zinc finger protein
TrEMBLB4FJ720.0B4FJ72_MAIZE; C2H2 transcription factor
STRINGGRMZM2G175000_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.15e-99C2H2 family protein