 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GRMZM2G174784_P04 |
| Common Name | LOC100280414 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
| Family |
AP2 |
| Protein Properties |
Length: 167aa MW: 16964.7 Da PI: 8.8857 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G174784_P04 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 34.8 | 4.2e-11 | 122 | 152 | 1 | 36 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkf 36
s+y+GV++++++grW+++I+d + k+++lgkf
GRMZM2G174784_P04 122 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGKF 152
78*******************......55*******9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010073 | Biological Process | meristem maintenance |
| GO:0010093 | Biological Process | specification of floral organ identity |
| GO:0048316 | Biological Process | seed development |
| GO:0048481 | Biological Process | plant ovule development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 167 aa
Download sequence Send
to blast |
MWDLNDSPAA EAAPPSPSAD DSGASSSSAA ALVEIPDDAD DDSAAAAAEA VVTRQFFPAP 60
AAVGAAPGPG SSSARAGWLR LAAAAPPPAA GGSNGVAQTG GPAAAAAAAG KKSRRGPRSR 120
SSQYRGVTFY RRTGRWESHI WDCGKQVYLG KFRSCPCIHI RTWERGG
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Zm.24062 | 0.0 | endosperm| glume| meristem| ovary| pericarp| shoot |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In developing panicles, highly expressed in the spikelet abscission zone (AZ) and the inner floral organs of 2 mm long spikelets. Later present at weak levels in the apiculus as well as in the palea and lemma to progressively fades out in 8 mm long spikelets. {ECO:0000269|PubMed:22408071}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves, stems, nodes, sheaths, panicles and young spikelets. Accumulates in the spikelet abscission zone (AZ) via a positive regulation by the transcription factor SH4. {ECO:0000269|PubMed:22408071}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT056188 | 0.0 | BT056188.1 Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds. |
