PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G174776_P01 | ||||||||
Common Name | CA5P14, LOC100277570, ZEAMMB73_487817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YC | ||||||||
Protein Properties | Length: 202aa MW: 21530.4 Da PI: 5.863 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 168.8 | 6.8e-53 | 62 | 164 | 1 | 100 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql+ fw++q ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaav+rt++f GRMZM2G174776_P01 62 QLQLFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAVARTEVF 153 89******99999******************************************************************************* PP NF-YC 90 dflvdivprde 100 dflvdivprde GRMZM2G174776_P01 154 DFLVDIVPRDE 164 *********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.85E-30 | 53 | 156 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-21 | 84 | 147 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-36 | 85 | 162 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEPNSSIPPP VMGAAVAYPP AAGAAYSAGP YAHAHAALGA LYPPPPAPGP PSSHQGGAAA 60 AQLQLFWAEQ YREIEATTDF KNHNLPLARI KKIMKADEDV RMIAAEAPVV FARACEMFIL 120 ELTHRGWAHA EENKRRTLQK SDIAAAVART EVFDFLVDIV PRDEPRDADP AAAAMGAAAP 180 GIPQHPAAAD PTTMGYYYVQ PQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 9e-57 | 70 | 162 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 140 | RRTLQKS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.22940 | 0.0 | aleurone| ear| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G174776 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G174776_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727007 | 0.0 | KJ727007.1 Zea mays clone pUT3983 CCAAT-HAP5 transcription factor (CA5P14) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001144564.2 | 1e-144 | uncharacterized protein LOC100277570 | ||||
Swissprot | Q9XE33 | 2e-70 | NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | A0A3L6F5H0 | 1e-143 | A0A3L6F5H0_MAIZE; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | K7V395 | 1e-143 | K7V395_MAIZE; CCAAT-HAP5 transcription factor | ||||
STRING | GRMZM2G174776_P01 | 1e-144 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 | Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 8e-58 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G174776_P01 |
Entrez Gene | 100277570 |
Publications ? help Back to Top | |||
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