PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G174284_P01 | ||||||||
Common Name | bZIP52, LOC100274089 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 335aa MW: 37434.4 Da PI: 8.9706 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.4 | 2e-10 | 50 | 92 | 4 | 46 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k+ rr+++NReAAr+sR+RKka++++Le +L + ++L+ GRMZM2G174284_P01 50 QKVLRRLAQNREAARKSRLRKKAYVQQLESSKLKLASLEQELQ 92 5899*************************86666666555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.6E-8 | 47 | 110 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.2E-8 | 47 | 94 | No hit | No description |
PROSITE profile | PS50217 | 9.289 | 49 | 93 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.88E-7 | 51 | 94 | No hit | No description |
Pfam | PF00170 | 2.0E-7 | 51 | 92 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 54 | 69 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.9E-32 | 133 | 208 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MADASSRTDT STVLDMDDKN QRLENGQSGA MALASNSSDR SDRSDKPMDQ KVLRRLAQNR 60 EAARKSRLRK KAYVQQLESS KLKLASLEQE LQKARQQGIF ISSSGDQTHA MSGNGAMTFD 120 LEYSRWQEEE NKQINELRTA VNAHASESDL RLIVDGIMAH YDEIFRLKGI AAKADVFHIL 180 SGMWKTPAER CFLWLGGFRS SELLKLLVNQ LEPLTEQQLM GLSNLQQSSQ QAEDALSQGM 240 EALQQSLAET LAGSLGPSGS SGNVANYMGQ MAMAMGKLGT LENFLRQADN LRQQTLHQMQ 300 RILTIRQAAR ALLAIHDYFS RLRALSSLWL ARPRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.95711 | 0.0 | embryo| meristem| ovary| root| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G174284 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G174284_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727805 | 0.0 | KJ727805.1 Zea mays clone pUT5757 bZIP transcription factor (bZIP52) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141940.1 | 0.0 | uncharacterized LOC100274089 | ||||
Refseq | XP_008668195.1 | 0.0 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Refseq | XP_008668203.1 | 0.0 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Swissprot | Q6IVC3 | 0.0 | TGA22_ORYSJ; Transcription factor TGA2.2 | ||||
TrEMBL | C0PEY3 | 0.0 | C0PEY3_MAIZE; BZIP transcription factor | ||||
STRING | GRMZM2G174284_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 | Representative plant | OGRP722 | 16 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-144 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G174284_P01 |
Entrez Gene | 100274089 |
Publications ? help Back to Top | |||
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