PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G174240_P01
Common Namesi946029b02
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 308aa    MW: 33398.8 Da    PI: 10.9959
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G174240_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57342.81.5e-13123191370
             DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvk 70 
                        +q+ ws++De +lL + + f++++g  p   d+ +++e +++sis ++ +  +  Ki+rLK Kf++   
  GRMZM2G174240_P01 123 AQKHWSDDDEFTLLTAAVAFRDRNGRAPRLpDMAELFESIRESISPHIDQFMVYYKIKRLKSKFQHSAG 191
                        6899**********************88877*********************************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-11124190IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSSGRPSEPA MNAGATPAAS SPPRSKKRPS RMGDGNSSPN PSPRGSPARR SELKRRRRTS  60
AESAALALAT VAARASAAGV RSDAGDGAVE RRRRPRTRAE GGDGAIRMLG AAAARVGGGR  120
GAAQKHWSDD DEFTLLTAAV AFRDRNGRAP RLPDMAELFE SIRESISPHI DQFMVYYKIK  180
RLKSKFQHSA GPRDRRLRDL CSVLWGVGVV ASSEDDSDVG ERRTVPDAAA MMPVVTEVLG  240
EYWKTNERAM AGVSLEKGLS LLGKKEGRLI ETKWRQQLDQ EMQSQMRRHD LAKEVCGLLT  300
DAIKGLGP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.334330.0shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G174240
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G174240_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2163530.0AC216353.5 Zea mays BAC clone CH201-194K18 from chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008681471.10.0si946029b02(451) isoform X1
TrEMBLB4FX430.0B4FX43_MAIZE; Uncharacterized protein
TrEMBLK0DCL90.0K0DCL9_MAIZE; GBP16 GeBP type transcription factor (Fragment)
STRINGGRMZM2G174240_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Representative plantOGRP1306744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01370.18e-09DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]