PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G174240_P01 | ||||||||
Common Name | si946029b02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GeBP | ||||||||
Protein Properties | Length: 308aa MW: 33398.8 Da PI: 10.9959 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 42.8 | 1.5e-13 | 123 | 191 | 3 | 70 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvk 70 +q+ ws++De +lL + + f++++g p d+ +++e +++sis ++ + + Ki+rLK Kf++ GRMZM2G174240_P01 123 AQKHWSDDDEFTLLTAAVAFRDRNGRAPRLpDMAELFESIRESISPHIDQFMVYYKIKRLKSKFQHSAG 191 6899**********************88877*********************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.8E-11 | 124 | 190 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MSSGRPSEPA MNAGATPAAS SPPRSKKRPS RMGDGNSSPN PSPRGSPARR SELKRRRRTS 60 AESAALALAT VAARASAAGV RSDAGDGAVE RRRRPRTRAE GGDGAIRMLG AAAARVGGGR 120 GAAQKHWSDD DEFTLLTAAV AFRDRNGRAP RLPDMAELFE SIRESISPHI DQFMVYYKIK 180 RLKSKFQHSA GPRDRRLRDL CSVLWGVGVV ASSEDDSDVG ERRTVPDAAA MMPVVTEVLG 240 EYWKTNERAM AGVSLEKGLS LLGKKEGRLI ETKWRQQLDQ EMQSQMRRHD LAKEVCGLLT 300 DAIKGLGP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.33433 | 0.0 | shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G174240 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G174240_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216353 | 0.0 | AC216353.5 Zea mays BAC clone CH201-194K18 from chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008681471.1 | 0.0 | si946029b02(451) isoform X1 | ||||
TrEMBL | B4FX43 | 0.0 | B4FX43_MAIZE; Uncharacterized protein | ||||
TrEMBL | K0DCL9 | 0.0 | K0DCL9_MAIZE; GBP16 GeBP type transcription factor (Fragment) | ||||
STRING | GRMZM2G174240_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2682 | 27 | 63 | Representative plant | OGRP13067 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01370.1 | 8e-09 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G174240_P01 |
Entrez Gene | 100273710 |
Publications ? help Back to Top | |||
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