PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G174070_P01
Common NameLOC100279912, NAC57, ZEAMMB73_179217
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 687aa    MW: 76138.7 Da    PI: 6.2411
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G174070_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.11.4e-5661331128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd+
  GRMZM2G174070_P01   6 LPPGFRFHPTDEELIICYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDR 96 
                        79****************************.99**************95334455777********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v s ++++vg+kktLv+y+grap+g++tdWvmheyrl
  GRMZM2G174070_P01  97 KVNS-HRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133
                        ****.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-644156IPR003441NAC domain
PROSITE profilePS5100560.8996156IPR003441NAC domain
PfamPF023653.3E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0009084anatomypericarp
PO:0020127anatomyprimary root
PO:0025287anatomyseedling coleoptile
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI ICYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HRRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGAV HHPIEQTQWM  180
GSSVERSPTL DLSSDVRGDD FDSSSFSFPT EAPMDSSMHG GLFGMQMSAP HEDAKWMQFL  240
SEDAFNATNP FFTNPASSSF SCLPSKVDVA LECARLQHRL SLPPLEVEDF PHDVSLDTKA  300
SVLRSSNPNN EVDILQEFLS VASASQELIN GTSSSYAAEM WAGAGTSSTS DTHYVNELSS  360
LFEFGVKAKE EADNFYHMDC IGTSSGFSPK PVRVDEPVRL VEIADMEEFK EEKRRVENLR  420
GVRLHNNDDL GEIPTDCCIT QYPISDTADI SGEAGHLTNP TSAGGLDTAP IFSQSQPDDF  480
AIGFSDDADP NASFDLCERV DVKHGLFVST VGAPKTFFHH VEPSKKVSFH LNNNPVASDD  540
DVSKATTGKS RSPIISVMTT KDSGSSFSVF SKLKALIRDK FLVKKLPSSC QRSLLGSKET  600
AAVSELLQMV VSSLLLTPTE VTGPTTEQEK LARKAMKPGP RRCDGSHAWL LPLPKRSKGI  660
SSMFFSGKWA FLTSALAIRA PGPGCNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-55116212171NO APICAL MERISTEM PROTEIN
1ut4_B1e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_A1e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_B1e-55116212171NO APICAL MERISTEM PROTEIN
3swm_A1e-55116215174NAC domain-containing protein 19
3swm_B1e-55116215174NAC domain-containing protein 19
3swm_C1e-55116215174NAC domain-containing protein 19
3swm_D1e-55116215174NAC domain-containing protein 19
3swp_A1e-55116215174NAC domain-containing protein 19
3swp_B1e-55116215174NAC domain-containing protein 19
3swp_C1e-55116215174NAC domain-containing protein 19
3swp_D1e-55116215174NAC domain-containing protein 19
4dul_A1e-55116212171NAC domain-containing protein 19
4dul_B1e-55116212171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.77560.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G174070
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G174070_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0551060.0BT055106.1 Zea mays full-length cDNA clone ZM_BFb0347B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146336.10.0uncharacterized protein LOC100279912
TrEMBLB8A0L40.0B8A0L4_MAIZE; NAC domain containing protein 28
STRINGGRMZM2G174070_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Representative plantOGRP87171015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-128NAC domain containing protein 28