PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G173943_P02
Common NameLOC100286254
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 312aa    MW: 34026.4 Da    PI: 6.3195
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G173943_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1071e-334599155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       ++rlrWt+eLHerFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  GRMZM2G173943_P02 45 RQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRL 99
                       58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.74942102IPR017930Myb domain
SuperFamilySSF466895.38E-184499IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-3244100IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-2646100IPR006447Myb domain, plants
PfamPF002494.4E-94798IPR001005SANT/Myb domain
PfamPF143795.3E-23132177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MYSPKPESSF GPNPNSGTHQ QQMELTGANM GPGNGANNNT NMAGRQRLRW TNELHERFVE  60
AVTQLGGPDR ATPKGVLRIM GVQGLTIYHV KSHLQKYRLA KYIPDASTDG NKTDNKDPGD  120
LLAGLEGSSG LQISEALKLQ MEVQKRLHEQ LEVQRQLQLR IEAQGKYLQK IIEEQQRLTG  180
VKSETPAGGA SVTVSSDQFP DSERTEPSTP APASESPTQV GASNRDTGDR TEATKSTCHG  240
DSLSRNEPLT PDSNCQNGSP VASPNHERAA KRQRGSGTEF LDSEAEFSLP RHIFESSSGS  300
EFQQYSMSYS GQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.825790.0aerial organ| cell culture| ear| endosperm| leaf| meristem| pericarp| shoot| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G173943
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G173943_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332050.0BT033205.1 Zea mays full-length cDNA clone ZM_BFb0066I21 mRNA, complete cds.
GenBankBT0398990.0BT039899.1 Zea mays full-length cDNA clone ZM_BFc0050C09 mRNA, complete cds.
GenBankBT0411540.0BT041154.1 Zea mays full-length cDNA clone ZM_BFc0181P18 mRNA, complete cds.
GenBankBT0858910.0BT085891.1 Zea mays full-length cDNA clone ZM_BFc0076P02 mRNA, complete cds.
GenBankBT0863350.0BT086335.1 Zea mays full-length cDNA clone ZM_BFc0154D10 mRNA, complete cds.
GenBankEU9764460.0EU976446.1 Zea mays clone 894637 MYB-CC type transfactor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152613.10.0MYB-CC type transfactor
RefseqXP_023156307.10.0MYB-CC type transfactor isoform X1
SwissprotQ9SJW03e-99PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A3L6DZW50.0A0A3L6DZW5_MAIZE; Myb family transcription factor PHL7
TrEMBLB4F7W70.0B4F7W7_MAIZE; MYB-CC type transfactor
TrEMBLK4JRK40.0K4JRK4_MAIZE; G2-like transcription factor (Fragment)
STRINGGRMZM2G173943_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.19e-76G2-like family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]