PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G173771_P01 | ||||||||
Common Name | ZEAMMB73_214192, Zm.128383 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 23962.7 Da PI: 8.4977 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.7e-20 | 95 | 145 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y GVr+++ +g+W+AeIrdp+ r +r +lg+f+tae+Aa+a++aa+ +l+g GRMZM2G173771_P01 95 SSYMGVRRRP-WGKWAAEIRDPR----RaARKWLGTFDTAEDAARAYDAAAVELRG 145 6799******.**********82....48*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.5E-22 | 95 | 154 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-13 | 95 | 145 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-31 | 96 | 154 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-31 | 96 | 159 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.816 | 96 | 153 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.19E-17 | 97 | 154 | No hit | No description |
PRINTS | PR00367 | 2.6E-10 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MTSRLESGGF QLPNTEQENA LLLRALISVV SGDTAAASLV PEAAAAEAPA AAASACGCPG 60 GCDLAAASSS DSDGAECSAS GGGAGKRRRR RSRASSYMGV RRRPWGKWAA EIRDPRRAAR 120 KWLGTFDTAE DAARAYDAAA VELRGRRAKL NFPDAAAAAA ARDVQPRRPL PGQSLRENCG 180 SNAASPLHVA VARAPTTLQG TGPAPPKDQD IWDGLNEIMT MDDGSFWSMP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 96 | 153 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 90 | KRRRRR |
2 | 86 | 102 | RRRRRSRASSYMGVRRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G173771 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G173771_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953802 | 0.0 | EU953802.1 Zea mays clone 1446523 ethylene-responsive element binding protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147181.2 | 1e-162 | ethylene-responsive element binding protein 2 | ||||
TrEMBL | K7U9V5 | 1e-161 | K7U9V5_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
STRING | GRMZM2G173771_P01 | 1e-162 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 2e-18 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G173771_P01 |