PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G173633_P01 | ||||||||
Common Name | LOC100279834, ZEAMMB73_932894, Zm.78503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 356aa MW: 38434.2 Da PI: 5.963 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.3e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l+ +++q+G+++W++I++ g+ R++k+c++rw +yl GRMZM2G173633_P01 14 RGQWTPEEDNKLLSYITQYGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.2 | 2.1e-14 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T E++ +++++ G++ W+ Ia+ ++ gRt++++k++w++ GRMZM2G173633_P01 68 GEFTDTEEQTIIKLHSVVGNR-WSVIAAQLP-GRTDNDVKNHWNT 110 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.716 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.31E-13 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.287 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.6E-13 | 68 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MGRIPCCEKD SVKRGQWTPE EDNKLLSYIT QYGTRNWRLI PKNAGLQRCG KSCRLRWTNY 60 LRPDLKHGEF TDTEEQTIIK LHSVVGNRWS VIAAQLPGRT DNDVKNHWNT KLKKKLSGMG 120 IDPITHKSFS HLMAEIATTL APPQVAHLAE AALGCFKDEM LHLLTKKRPT DFPSPAVPDM 180 SAIAGGSGVA APCGFPAPPQ TDDTIERIKL GLSRAIMSEP AAPPGKQEQP WAPADLPEGL 240 PGMYATYNPA SHGHEEFRYD NGTVPEYVLG GGGGADQGTS MWSHQSMYSG SSATEAAPRP 300 AEVLPEKGND SVGSSGGGEE ADDVKDGGKG GSDMSGLFGS DCVLWDLPDE LTNHMV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G173633 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing anthers during meiosis and young microspore stages. {ECO:0000269|PubMed:16141453}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00564 | DAP | Transfer from AT5G56110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G173633_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034238 | 0.0 | BT034238.1 Zea mays full-length cDNA clone ZM_BFc0028K07 mRNA, complete cds. | |||
GenBank | BT039422 | 0.0 | BT039422.1 Zea mays full-length cDNA clone ZM_BFc0012M19 mRNA, complete cds. | |||
GenBank | BT040670 | 0.0 | BT040670.1 Zea mays full-length cDNA clone ZM_BFc0113I05 mRNA, complete cds. | |||
GenBank | BT043240 | 0.0 | BT043240.1 Zea mays full-length cDNA clone ZM_BFc0129J22 mRNA, complete cds. | |||
GenBank | BT054988 | 0.0 | BT054988.1 Zea mays full-length cDNA clone ZM_BFc0168O09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146260.1 | 0.0 | uncharacterized LOC100279834 | ||||
Swissprot | Q7XQN1 | 0.0 | MYB80_ORYSJ; Transcription factor MYB80 | ||||
TrEMBL | B4FAV0 | 0.0 | B4FAV0_MAIZE; Transcription factor MYB80 | ||||
STRING | GRMZM2G173633_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10867 | 33 | 39 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 1e-111 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G173633_P01 |
Entrez Gene | 100279834 |