PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G173429_P02
Common NameZEAMMB73_148543, Zm.84295
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 397aa    MW: 41828.6 Da    PI: 7.9813
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G173429_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.41.1e-92293972374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL e+A a+++g++ +a + La l+  a+++gd+ qRl+a+++ AL++r++      +++ p+++ +e    e+ a  +l++++sP++++
  GRMZM2G173429_P02  29 RQLLSEAAVAIADGNHDAAASHLAALKRAANQHGDAEQRLIAMMVAALSSRIVP-----AASAPAQHLAELCGFEQRAGSQLLQDISPCFRV 115
                        689***************************************************.....5556666666666777778889*********** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl 181
                        +  +a  aI++av  ++++H +Dfd+s + Q +aL+q La++p +  sl++T+v +p+s      + +l ++gerL+k+Ae+ gv+ +f+v 
  GRMZM2G173429_P02 116 ALHAASVAIVDAVGDHRAIHLVDFDVSLP-QHAALIQYLADQPVQGRSLKVTAVTDPSSPftqsLTASLPAIGERLKKLAERAGVEYRFKV- 205
                        ***************************98.99************************99888877788999********************9. PP

               GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                        v+ r ++l+ ++L ++pgEa+aVnl+++l +++desvs +++rde+L+ v+ l P+vv++veqe+++n++++++rf++a+ +y a+++sl+a
  GRMZM2G173429_P02 206 VSCRAAELDASRLCCEPGEAVAVNLAFALSHVPDESVSPANPRDELLRRVRALGPQVVTLVEQELNTNTAPLAARFTDACAHYGAILESLDA 297
                        7999**************************************************************************************** PP

               GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl.llrkvksdgyrveeesgslvlgWkd 364
                        +l+re+ e++  E++ l+r++ n+v   g +r er+e ++kWr+r+++aGF+pv+l++++a+q+ +  +  v+  g++v+ e+g l l+W++
  GRMZM2G173429_P02 298 TLGRETAEKARAEAA-LSRKAANAVGRDGPDRLERCEVFGKWRARFGMAGFRPVSLGSSIAEQMVApRVGPVP-PGFTVKAENGVLRLCWMG 387
                        **************9.*********************************************998762555565.9***************** PP

               GRAS 365 rpLvsvSaWr 374
                        r ++++SaWr
  GRMZM2G173429_P02 388 RVVTVASAWR 397
                        *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575119No hitNo description
PROSITE profilePS5098542.3562377IPR005202Transcription factor GRAS
PfamPF035143.8E-9029397IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MTRSPSNSSS STASSSASCS PPTPGAASRQ LLSEAAVAIA DGNHDAAASH LAALKRAANQ  60
HGDAEQRLIA MMVAALSSRI VPAASAPAQH LAELCGFEQR AGSQLLQDIS PCFRVALHAA  120
SVAIVDAVGD HRAIHLVDFD VSLPQHAALI QYLADQPVQG RSLKVTAVTD PSSPFTQSLT  180
ASLPAIGERL KKLAERAGVE YRFKVVSCRA AELDASRLCC EPGEAVAVNL AFALSHVPDE  240
SVSPANPRDE LLRRVRALGP QVVTLVEQEL NTNTAPLAAR FTDACAHYGA ILESLDATLG  300
RETAEKARAE AALSRKAANA VGRDGPDRLE RCEVFGKWRA RFGMAGFRPV SLGSSIAEQM  360
VAPRVGPVPP GFTVKAENGV LRLCWMGRVV TVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-404739722375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.842950.0cell culture| endosperm| glume| meristem| ovary| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G173429
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G173429_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403810.0BT040381.1 Zea mays full-length cDNA clone ZM_BFc0087O19 mRNA, complete cds.
GenBankBT0840740.0BT084074.1 Zea mays full-length cDNA clone ZM_BFb0071H03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401436.10.0scarecrow-like protein 8
TrEMBLB4FTE30.0B4FTE3_MAIZE; Uncharacterized protein
TrEMBLC4IZS70.0C4IZS7_MAIZE; Uncharacterized protein
TrEMBLK7UKW80.0K7UKW8_MAIZE; Uncharacterized protein
STRINGGRMZM2G173429_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.14e-85SCARECROW-like 8