PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G173429_P01 | ||||||||
Common Name | ZEAMMB73_148543, Zm.84295 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 623aa MW: 65303.7 Da PI: 6.7864 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 300.3 | 4.8e-92 | 255 | 623 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 ++lL e+A a+++g++ +a + La l+ a+++gd+ qRl+a+++ AL++r++ +++ p+++ +e e+ a +l++++sP++++ GRMZM2G173429_P01 255 RQLLSEAAVAIADGNHDAAASHLAALKRAANQHGDAEQRLIAMMVAALSSRIVP-----AASAPAQHLAELCGFEQRAGSQLLQDISPCFRV 341 689***************************************************.....5556666666666777778889*********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl 181 + +a aI++av ++++H +Dfd+s + Q +aL+q La++p + sl++T+v +p+s + +l ++gerL+k+Ae+ gv+ +f+v GRMZM2G173429_P01 342 ALHAASVAIVDAVGDHRAIHLVDFDVSLP-QHAALIQYLADQPVQGRSLKVTAVTDPSSPftqsLTASLPAIGERLKKLAERAGVEYRFKV- 431 ***************************98.99************************99888877788999********************9. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 v+ r ++l+ ++L ++pgEa+aVnl+++l +++desvs +++rde+L+ v+ l P+vv++veqe+++n++++++rf++a+ +y a+++sl+a GRMZM2G173429_P01 432 VSCRAAELDASRLCCEPGEAVAVNLAFALSHVPDESVSPANPRDELLRRVRALGPQVVTLVEQELNTNTAPLAARFTDACAHYGAILESLDA 523 7999**************************************************************************************** PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl.llrkvksdgyrveeesgslvlgWkd 364 +l+re+ e++ E++ l+r++ n+v g +r er+e ++kWr+r+++aGF+pv+l++++a+q+ + + v+ g++v+ e+g l l+W++ GRMZM2G173429_P01 524 TLGRETAEKARAEAA-LSRKAANAVGRDGPDRLERCEVFGKWRARFGMAGFRPVSLGSSIAEQMVApRVGPVP-PGFTVKAENGVLRLCWMG 613 **************9.*********************************************998762555565.9***************** PP GRAS 365 rpLvsvSaWr 374 r ++++SaWr GRMZM2G173429_P01 614 RVVTVASAWR 623 *********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.356 | 228 | 603 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-89 | 255 | 623 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MEPGAPWRGP RQGYAYGVGS ATAMQMQLQE RADAAAGGGV LKRSLGELER WQHQQQHVAA 60 QQALYLRAVR QRTAAAVDIA ALLGGIPSQV VPGSSFGGGL ASPSSTLSSL TTASRAAVPL 120 MQPQPQRQGP LMTSSPQTQA FGLSRAPLPQ PSVSSDLFIL QELEKQLLDD DDDDNEPVAA 180 MSGTGSAVTN SEWEETIQQL SSIAAAPSPG PPAAATPTNN NNNNVGMTRS PSNSSSSTAS 240 SSASCSPPTP GAASRQLLSE AAVAIADGNH DAAASHLAAL KRAANQHGDA EQRLIAMMVA 300 ALSSRIVPAA SAPAQHLAEL CGFEQRAGSQ LLQDISPCFR VALHAASVAI VDAVGDHRAI 360 HLVDFDVSLP QHAALIQYLA DQPVQGRSLK VTAVTDPSSP FTQSLTASLP AIGERLKKLA 420 ERAGVEYRFK VVSCRAAELD ASRLCCEPGE AVAVNLAFAL SHVPDESVSP ANPRDELLRR 480 VRALGPQVVT LVEQELNTNT APLAARFTDA CAHYGAILES LDATLGRETA EKARAEAALS 540 RKAANAVGRD GPDRLERCEV FGKWRARFGM AGFRPVSLGS SIAEQMVAPR VGPVPPGFTV 600 KAENGVLRLC WMGRVVTVAS AWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-38 | 273 | 623 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.84295 | 0.0 | cell culture| endosperm| glume| meristem| ovary| pericarp| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G173429 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G173429_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT084074 | 0.0 | BT084074.1 Zea mays full-length cDNA clone ZM_BFb0071H03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020401436.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | K7UKW8 | 0.0 | K7UKW8_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G173429_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4188 | 34 | 74 | Representative plant | OGRP7599 | 9 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 6e-83 | SCARECROW-like 8 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G173429_P01 |