PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G173425_P01
Common NameLOC100285990
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LSD
Protein Properties Length: 175aa    MW: 18288.1 Da    PI: 8.3201
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G173425_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.71.6e-12731125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       C+ CrtlL YPrGA+sV+Ca+C+++
  GRMZM2G173425_P01  7 CHACRTLLLYPRGASSVCCAVCQAI 31
                       ***********************97 PP
2zf-LSD1406.7e-134670125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       CggCrtlL+Y+r A  VRC++C+tV
  GRMZM2G173425_P01 46 CGGCRTLLMYTRSADTVRCSCCNTV 70
                       ************************9 PP
3zf-LSD148.71.2e-1584108125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+Crt+L+YP+GApsV+Ca+C+ V
  GRMZM2G173425_P01  84 CGQCRTTLMYPYGAPSVKCAVCNYV 108
                        ***********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.5E-13434IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-10731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.3E-154373IPR005735Zinc finger, LSD1-type
PfamPF069437.9E-114670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.9E-1281109IPR005735Zinc finger, LSD1-type
PfamPF069432.8E-1484108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MQNQIMCHAC RTLLLYPRGA SSVCCAVCQA ITTVPPPGLE MAQLICGGCR TLLMYTRSAD  60
TVRCSCCNTV NLVRPVNNIA HVNCGQCRTT LMYPYGAPSV KCAVCNYVTA TGVNTVAPTP  120
SARPTSDGSS YSGSSTSAPK SQSQNVTVVV ENPMTVDDKG KLVSSVVVGV TAGKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.266200.0cell culture| ear| leaf| meristem| ovary| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G173425
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G173425_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0692400.0BT069240.1 Zea mays full-length cDNA clone ZM_BFc0001K22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152350.11e-123uncharacterized protein LOC100285990 precursor
SwissprotQ6ASS23e-96LOL3_ORYSJ; Protein LOL3
TrEMBLA0A1D6KX971e-122A0A1D6KX97_MAIZE; Protein LSD1
TrEMBLB6UCT41e-122B6UCT4_MAIZE; LSD1-like zinc finger protein
STRINGGRMZM2G173425_P011e-123(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.14e-53lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]