PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G173372_P02
Common NamebHLH35, LOC100381478
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 357aa    MW: 37833.4 Da    PI: 4.709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G173372_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-12195237754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  GRMZM2G173372_P02 195 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 237
                        79*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.351188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-16192259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-15195255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9195237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.02E-5201242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MELDEETTFL DELMSLRREA AAAASAQWQA AAAYTGGGGQ GMMMGDLLFY GGTTEAAATA  60
TSGGGMDQLS PFHQQEPLQV QAPPHPHSHE EFNFDCLSEV CNPYRGGGVA VITGAEAAAV  120
PGRALAALHD AMVEDETSGH LQGQQYGAGG SPTFVFGGAA GESSEQTPVV VRGAAGGPHH  180
RSKVHGGGAP SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILGDT IDYVKELTER  240
IKVLEEEIGA SAEDLDLLNT LKASSSSGSN EMMVRNSTKF DVERRGNGST RIEICCATNP  300
EVLLSTVSAL EVLGLEIEQC VVSCFSDFGM QASCSQVSSS TTCMVKGSDS FFILETV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196203ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.30490.0meristem| root| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G173372
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G173372_P02
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613580.0BT061358.1 Zea mays full-length cDNA clone ZM_BFb0138N18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149796.20.0uncharacterized protein LOC100283423
TrEMBLC0HGA20.0C0HGA2_MAIZE; BHLH transcription factor
STRINGGRMZM2G173372_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-53beta HLH protein 93