PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G173090_P02
Common NameZEAMMB73_949484
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 350aa    MW: 38154.7 Da    PI: 4.6996
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G173090_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.52.7e-30511412101
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl k++e++ed++++ +isw +  nsfvv+d++ fa   Lp+ Fkh nf+ F+RQLn+YgF+kv+ ++         weF+h  F +g+++l
  GRMZM2G173090_P02  51 FLAKTFELVEDPATDAVISWGAARNSFVVWDPHAFAAGHLPRRFKHGNFSTFLRQLNTYGFRKVSPDR---------WEFAHTDFLAGQRHL 133
                        9********************999******************************************99.........*************** PP

                        XXXXXXXX CS
       HSF_DNA-bind  94 lekikrkk 101
                        l +i+r++
  GRMZM2G173090_P02 134 LVNIRRRR 141
                        ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.26E-3146140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5147140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.6E-3348140IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-155174IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-2751140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-1589101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-15102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MERPDVTVKQ EEEDEVVVVL DGDGDACGHW PGAGAAPEPW QTPVGSAVPP FLAKTFELVE  60
DPATDAVISW GAARNSFVVW DPHAFAAGHL PRRFKHGNFS TFLRQLNTYG FRKVSPDRWE  120
FAHTDFLAGQ RHLLVNIRRR RGGAAGSTAS PSSAGAGGDR DSELETLRRD REALARELTR  180
LRREQEEARA QLLDMERRVR GTERRQEQCT AFLARAIRNP AFLDGLLARR CGAHVEAGRK  240
RRLLDAAAAG PDPADVLDIE ELAMAAGAEV GVASIPAVAA AQISNTANAT DMIWYELLGE  300
EQVEIDAEVH DLVAAAAAAT DELAQPWAEM DEKEVAELVR QIDCLASPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A8e-25481407110Heat shock factor protein 1
5hdn_A8e-25481407110Heat shock factor protein 1
5hdn_B8e-25481407110Heat shock factor protein 1
5hdn_C8e-25481407110Heat shock factor protein 1
5hdn_D8e-25481407110Heat shock factor protein 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G173090
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G173090_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9757890.0EU975789.1 Zea mays clone 500942 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001356225.10.0heat shock factor protein HSF30
SwissprotQ5Z6A41e-102HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLK7VH390.0K7VH39_MAIZE; Heat shock factor protein HSF30
STRINGGRMZM2G173090_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-45heat shock transcription factor A2