PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G173090_P01 | ||||||||
Common Name | ZEAMMB73_949484 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HSF | ||||||||
Protein Properties | Length: 365aa MW: 39945.7 Da PI: 4.9423 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 85.4 | 7.6e-27 | 51 | 156 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT......XTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks......kekiweFkhksFk 87 Fl k++e++ed++++ +isw + nsfvv+d++ fa Lp+ Fkh nf+ F+RQLn+Y + +++ +++ +++ weF+h F GRMZM2G173090_P01 51 FLAKTFELVEDPATDAVISWGAARNSFVVWDPHAFAAGHLPRRFKHGNFSTFLRQLNTYVRNHISQFVINKHCngfrkvSPDRWEFAHTDFL 142 9********************999***********************************8777776554433344444359*********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkk 101 +g+++ll +i+r++ GRMZM2G173090_P01 143 AGQRHLLVNIRRRR 156 ************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.04E-28 | 46 | 155 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.9E-43 | 47 | 155 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.7E-30 | 48 | 155 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.0E-10 | 51 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.7E-24 | 51 | 155 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-10 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-10 | 102 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MERPDVTVKQ EEEDEVVVVL DGDGDACGHW PGAGAAPEPW QTPVGSAVPP FLAKTFELVE 60 DPATDAVISW GAARNSFVVW DPHAFAAGHL PRRFKHGNFS TFLRQLNTYV RNHISQFVIN 120 KHCNGFRKVS PDRWEFAHTD FLAGQRHLLV NIRRRRGGAA GSTASPSSAG AGGDRDSELE 180 TLRRDREALA RELTRLRREQ EEARAQLLDM ERRVRGTERR QEQCTAFLAR AIRNPAFLDG 240 LLARRCGAHV EAGRKRRLLD AAAAGPDPAD VLDIEELAMA AGAEVGVASI PAVAAAQISN 300 TANATDMIWY ELLGEEQVEI DAEVHDLVAA AAAATDELAQ PWAEMDEKEV AELVRQIDCL 360 ASPSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 2e-21 | 48 | 155 | 7 | 110 | Heat shock factor protein 1 |
5hdn_A | 2e-21 | 48 | 155 | 7 | 110 | Heat shock factor protein 1 |
5hdn_B | 2e-21 | 48 | 155 | 7 | 110 | Heat shock factor protein 1 |
5hdn_C | 2e-21 | 48 | 155 | 7 | 110 | Heat shock factor protein 1 |
5hdn_D | 2e-21 | 48 | 155 | 7 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G173090 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G173090_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU965439 | 0.0 | EU965439.1 Zea mays clone 286056 heat shock factor protein HSF30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001356225.1 | 0.0 | heat shock factor protein HSF30 | ||||
Swissprot | Q5Z6A4 | 1e-97 | HFA6A_ORYSJ; Putative heat stress transcription factor A-6a | ||||
TrEMBL | K7VH39 | 0.0 | K7VH39_MAIZE; Heat shock factor protein HSF30 | ||||
STRING | GRMZM2G173090_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 | Representative plant | OGRP14032 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 5e-41 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G173090_P01 |