PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G172795_P01
Common NameZ092E12.4
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 557aa    MW: 60315.1 Da    PI: 5.2982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G172795_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.1e-13379426355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        ++h + Er+RR+++N+ f  L++l+P+        K++Ka+iL +++ Y+k+Lq
  GRMZM2G172795_P01 379 KNHVMLERKRREKLNEMFLVLKSLVPSiH------KVDKASILAETIAYLKELQ 426
                        5899***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-3120166IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.158376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-11379426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-18379437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-16379430No hitNo description
Gene3DG3DSA:4.10.280.101.8E-17380436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-16382431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MALSACPAQE ELLQPAGRPL RKQLAAAARS INWSYSLFWS ISSTQRPRVL TWTDGFYNGE  60
VKTRKISHSV ELTADQLLMQ RSEQLRELYE ALQSGECDRR AARPVGSLSP EDLGDTEWYY  120
VICMTYAFLP GQGLPGRSSA SNEHVWLCNA HLAGSKDFPR ALLAKVPEDP DLINRATAAF  180
REPQCPIYSE QPSSNPSADE TGEAADIAVF EGLDHNAMDM ETAGIAVFEG LDHNAMDMET  240
VTAAAGRHGT GQELGEADSP SNASLEHITK GIDEFYNLCE EMDVQPLEDA WIMDGSNFEV  300
PSSALPVDGS SAPADGSRAT SFVAWTRSSQ SCSGEAAAVP VIEEPQKLLK KAVAGGGAWA  360
NTNCGGGGTT VTAQENGAKN HVMLERKRRE KLNEMFLVLK SLVPSIHKVD KASILAETIA  420
YLKELQRRVQ ELESRRQGGS GCVSKKVCVG SNSKRKSPEF AGGAKEHPWV LPMDGTSNVT  480
VTVSDRDVLL EVQCLWEKLL MTRVFDAIKS LHLDALSVQA SALDGFMRLK IGAQFAGSGA  540
VVPGMISQSL RKAIGKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384389ERKRRE
2385390RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.820.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G172795
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G172795_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX572760.0X57276.1 Z.mays B-Peru gene for a regulatory protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669036.10.0colored plant 1
RefseqXP_008669037.10.0colored plant 1
SwissprotP130270.0ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLQ8S4700.0Q8S470_MAIZE; Regulatory protein
STRINGGRMZM2G172795_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Representative plantOGRP24471429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.16e-63bHLH family protein
Publications ? help Back to Top
  1. Stam M, et al.
    The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences.
    Genetics, 2002. 162(2): p. 917-30
    [PMID:12399399]
  2. Radicella JP,Brown D,Tolar LA,Chandler VL
    Allelic diversity of the maize B regulatory gene: different leader and promoter sequences of two B alleles determine distinct tissue specificities of anthocyanin production.
    Genes Dev., 1992. 6(11): p. 2152-64
    [PMID:1427078]
  3. Swigonov
    Close split of sorghum and maize genome progenitors.
    Genome Res., 2004. 14(10A): p. 1916-23
    [PMID:15466289]
  4. Lai J, et al.
    Gene loss and movement in the maize genome.
    Genome Res., 2004. 14(10A): p. 1924-31
    [PMID:15466290]
  5. Swigonov
    Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum.
    Genetics, 2005. 169(2): p. 891-906
    [PMID:15489523]
  6. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  7. Radicella JP,Turks D,Chandler VL
    Cloning and nucleotide sequence of a cDNA encoding B-Peru, a regulatory protein of the anthocyanin pathway in maize.
    Plant Mol. Biol., 1991. 17(1): p. 127-30
    [PMID:1868212]
  8. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  9. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  10. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]
  11. Harris LJ,Currie K,Chandler VL
    Large tandem duplication associated with a Mu2 insertion in Zea mays B-Peru gene.
    Plant Mol. Biol., 1994. 25(5): p. 817-28
    [PMID:8075398]