PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G172605_P02
Common NameLOC100502466
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 484aa    MW: 51689.7 Da    PI: 10.4998
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G172605_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-05227249223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         Cp Cg++F+  ++L++H+   H
  GRMZM2G172605_P02 227 ACPQCGEVFTMADSLEHHQAIrH 249
                        6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.265226254IPR007087Zinc finger, C2H2
PROSITE patternPS000280226249IPR007087Zinc finger, C2H2
SuperFamilySSF563991.47E-13251480No hitNo description
Gene3DG3DSA:3.90.228.101.7E-8253480IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MPLATLLLPS VSTPTAGDHR THSRRHDHHH GSKRKKKPPP PPSPQPSLPL APRTPPPPGA  60
PSPKVRAAGK NNHAQYQYQQ RRGQPTKNRA AAASSSWEQV KSLLSCRTAT AAARVHDPSA  120
LARLRGASLC AMRDVVLSSA SGDRDTAPLN RRRAPSSSAA SGAGSSSHHS SLRGLSGCYE  180
CRAIDVEPMS RSVRFRPINL FLKQITMINA RLTITRRRYP RPRELCACPQ CGEVFTMADS  240
LEHHQAIRHA VSELGPEDSG RNIVDIIFNS SWQKRGRPIC HIDRILKVHN APRTVARFEA  300
YRDAVRSRSR CRAAARVAAD GNELLRFHSA PLACALGLGG ATALCCAGGA SSPCGVCTAI  360
RHGFAPWAGA HPLGVRTTAS SARAHDCGCS ASPSSVQQTQ QPANDAAACR AMLVCRVIAG  420
RVRRGGGGGA TSNAADEDQE GPFDSVAVED AVSSSMYGNL EELFVANPRA ILPCFVVIYR  480
VLDA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G172605
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G172605_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882650.0BT088265.1 Zea mays full-length cDNA clone ZM_BFc0107H01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020403565.10.0uncharacterized protein LOC100502466 isoform X1
TrEMBLC4JBR80.0C4JBR8_MAIZE; C2H2-like zinc finger protein
STRINGGRMZM2G172605_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.17e-54C2H2-like zinc finger protein