PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G172605_P01
Common NameLOC100502466
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 459aa    MW: 48705 Da    PI: 10.0006
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G172605_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05202224223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         Cp Cg++F+  ++L++H+   H
  GRMZM2G172605_P01 202 ACPQCGEVFTMADSLEHHQAIrH 224
                        6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280201224IPR007087Zinc finger, C2H2
PROSITE profilePS501579.265201229IPR007087Zinc finger, C2H2
SuperFamilySSF563991.29E-13226455No hitNo description
Gene3DG3DSA:3.90.228.101.5E-8228455IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MPLATLLLPS VSTPTAGDHR THSRRHDHHH GSKRKKKPPP PPSPQPSLPL APRTPPPPGA  60
PSPKVRAAGK NNHAQYQYQQ RRGQPTKNRA AAASSSWEQV KSLLSCRTAT AAARVHDPSA  120
LARLRGASLC AMRDVVLSSA SGDRDTAPLN RRRAPSSSAA SGAGSSSHHS SLRGLSGCYE  180
CRAIDVEPMS RRRYPRPREL CACPQCGEVF TMADSLEHHQ AIRHAVSELG PEDSGRNIVD  240
IIFNSSWQKR GRPICHIDRI LKVHNAPRTV ARFEAYRDAV RSRSRCRAAA RVAADGNELL  300
RFHSAPLACA LGLGGATALC CAGGASSPCG VCTAIRHGFA PWAGAHPLGV RTTASSARAH  360
DCGCSASPSS VQQTQQPAND AAACRAMLVC RVIAGRVRRG GGGGATSNAA DEDQEGPFDS  420
VAVEDAVSSS MYGNLEELFV ANPRAILPCF VVIYRVLDA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G172605
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G172605_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882650.0BT088265.1 Zea mays full-length cDNA clone ZM_BFc0107H01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183873.10.0uncharacterized protein LOC100502466
TrEMBLC4JBR80.0C4JBR8_MAIZE; C2H2-like zinc finger protein
STRINGGRMZM2G172605_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-54C2H2-like zinc finger protein