PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G172575_P01
Common NameZEAMMB73_543427
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 328aa    MW: 36735.9 Da    PI: 10.3597
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G172575_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.4e-1456103148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+W +eEd+ lv +++++G+  W+ +a+  g+ R+ k+c++rw +yl
  GRMZM2G172575_P01  56 KGPWMPEEDLVLVSYIHEHGPSKWRHVAASTGLMRCSKSCRLRWTNYL 103
                        79********************************************97 PP
2Myb_DNA-binding47.44.4e-15109154148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg +T+ E+  +v+++ +lG++ W++Ia++++  Rt++++k++w+++l
  GRMZM2G172575_P01 109 RGHFTAREERVIVHLHSLLGNR-WAAIASHLP-QRTDNDIKNYWNTHL 154
                        799*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.07151103IPR017930Myb domain
SuperFamilySSF466891.51E-2754150IPR009057Homeodomain-like
SMARTSM007173.9E-1055105IPR001005SANT/Myb domain
PfamPF002494.0E-1356103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2057110IPR009057Homeodomain-like
CDDcd001675.40E-958103No hitNo description
PROSITE profilePS5129424.266104158IPR017930Myb domain
SMARTSM007173.0E-14108156IPR001005SANT/Myb domain
PfamPF002491.2E-13109154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-24111157IPR009057Homeodomain-like
CDDcd001679.47E-11112154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MHVSMCIYNR RHTHASFKEQ GGRSDRRRKM ESRPPMPWCA CDRAGTTTTM TTAIKKGPWM  60
PEEDLVLVSY IHEHGPSKWR HVAASTGLMR CSKSCRLRWT NYLRPGIRRG HFTAREERVI  120
VHLHSLLGNR WAAIASHLPQ RTDNDIKNYW NTHLKKKKVV VEEQQRAAAA AAKRHVDDGG  180
ITTSRSPRLL AKDDSYGYDY DARPAAAYPC TMDNVSKPLK VKLGCMKSAS SSSPPAQDGS  240
SSIRRPFFSL DQTSGSTAPL PPISNVVPQP VLAGQGRHGG RFFHEPPQQQ LSSIMENWLF  300
LPKQQHQQQM TASSPTPTAA AHCPCCFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-254915720127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G172575
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G172575_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275220.0KJ727522.1 Zea mays clone pUT5381 MYB transcription factor (MYB107) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662386.10.0myb-related protein 308
TrEMBLA0A060D6030.0A0A060D603_MAIZE; MYB transcription factor (Fragment)
STRINGGRMZM2G172575_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.19e-59myb domain protein 30