PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G172487_P01
Common NameMYB123, ZEAMMB73_773186, Zm.13883
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 313aa    MW: 34562.2 Da    PI: 9.8943
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G172487_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.48.1e-143178148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W +eEd+ lv +++++G+  W+ +++  g+ R+ k+c++rw +yl
  GRMZM2G172487_P01 31 KGPWMPEEDLVLVSYIHEHGPTKWRHVPASTGLMRCSKSCRLRWTNYL 78
                       79********************************************97 PP
2Myb_DNA-binding50.25.7e-1684129148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T+ E+  +v+++ +lG++ W++Ia++++  Rt++++k++w+++l
  GRMZM2G172487_P01  84 RGNFTPREERVIVHLHSLLGNR-WAAIASHLP-QRTDNDIKNYWNTHL 129
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2512678IPR017930Myb domain
SuperFamilySSF466891.87E-2729125IPR009057Homeodomain-like
SMARTSM007172.7E-93080IPR001005SANT/Myb domain
PfamPF002497.2E-133178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-203285IPR009057Homeodomain-like
CDDcd001671.96E-83378No hitNo description
PROSITE profilePS5129424.85679133IPR017930Myb domain
SMARTSM007175.0E-1583131IPR001005SANT/Myb domain
PfamPF002491.5E-1484129IPR001005SANT/Myb domain
CDDcd001671.82E-1186129No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2586133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0020127anatomyprimary root
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEQGDDHRRK MGSRPPWCAC DRAGNTAAMK KGPWMPEEDL VLVSYIHEHG PTKWRHVPAS  60
TGLMRCSKSC RLRWTNYLRP GIRRGNFTPR EERVIVHLHS LLGNRWAAIA SHLPQRTDND  120
IKNYWNTHLK KKLVVVEEQH RAAAAAAIVA AAARGHVDDD GVTTSSSPRL LAKDDSYGYG  180
YDARPAAAYP CSMDNVSKLV KVKAGCMKSA SSSSPPAQDG SSIRRPFFSL DQTSRSTAPL  240
PPISNVVPQL AGTVLAGQGQ GRHGGRFFHE PPQQQLSSIM ENWLFLPKHQ HQQQMTQSSP  300
TPTAAAHCPC CFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-252913325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G172487
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G172487_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278710.0KJ727871.1 Zea mays clone pUT5963 MYB transcription factor (MYB123) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662384.10.0transcription factor MYB4
TrEMBLK7UB980.0K7UB98_MAIZE; MYB transcription factor (Fragment)
STRINGGRMZM2G172487_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.23e-64myb domain protein 96