PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G172264_P01
Common NameZEAMMB73_917413
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 283aa    MW: 31152.4 Da    PI: 5.7318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G172264_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.63.7e-3461423127
                NAM   3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                        pGfrF Pt+eel+++yL++k++g++   ++e+vi+ +d++++   +  +          +++++e+ w++F++r++++a+g r++r+t sgy
  GRMZM2G172264_P01   6 PGFRFYPTEEELICFYLRNKLSGTRrgDDIERVIPVADLTTTMALRHTThayadeahrgAYSGDEEPWFYFCPRQEREARGGRPSRTTPSGY 97 
                        9**********************99887888889999998886544432467777776544557779************************* PP

                NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                        Wka g+   v++++g+ +g+kkt+vfy grap g+kt+W ++ey+
  GRMZM2G172264_P01  98 WKAAGTPGLVYAADGRPIGTKKTMVFYCGRAPGGTKTKWKLNEYK 142
                        ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-374182IPR003441NAC domain
PROSITE profilePS5100538.2494182IPR003441NAC domain
PfamPF023653.3E-226142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAEPAPGFRF YPTEEELICF YLRNKLSGTR RGDDIERVIP VADLTTTMAL RHTTHAYADE  60
AHRGAYSGDE EPWFYFCPRQ EREARGGRPS RTTPSGYWKA AGTPGLVYAA DGRPIGTKKT  120
MVFYCGRAPG GTKTKWKLNE YKAFQYEDDD EVAVVAAPAP PTTPSHALQT RSEYSLCRLY  180
TKSGSPRQFD RRPSSSAAVV AAGGGGSEHP ARPPSAAALP DGEQTRQRRK RAAPPSDDDT  240
SSSSYDDGST QQQQLLLADR GTDNDGIVED MADWSEFLDG WII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-24618819171NO APICAL MERISTEM PROTEIN
1ut4_B1e-24618819171NO APICAL MERISTEM PROTEIN
1ut7_A1e-24618819171NO APICAL MERISTEM PROTEIN
1ut7_B1e-24618819171NO APICAL MERISTEM PROTEIN
3swm_A1e-24618822174NAC domain-containing protein 19
3swm_B1e-24618822174NAC domain-containing protein 19
3swm_C1e-24618822174NAC domain-containing protein 19
3swm_D1e-24618822174NAC domain-containing protein 19
3swp_A1e-24618822174NAC domain-containing protein 19
3swp_B1e-24618822174NAC domain-containing protein 19
3swp_C1e-24618822174NAC domain-containing protein 19
3swp_D1e-24618822174NAC domain-containing protein 19
4dul_A1e-24618819171NAC domain-containing protein 19
4dul_B1e-24618819171NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G172264
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G172264_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156625.11e-161NAC domain-containing protein 90
SwissprotQ9FMR38e-58NAC90_ARATH; NAC domain-containing protein 90
TrEMBLK7V3340.0K7V334_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGGRMZM2G172264_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Representative plantOGRP22781136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-58NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]