PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G171852_P01

Common Name

DOF22, LOC100275168

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Dof

Protein Properties

Length: 359aa MW: 36207.1 Da PI: 8.6626

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G171852_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	60	121	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss GRMZM2G171852_P01 60 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 121 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-27	54	109	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	62	118	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	64	118	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	66	102	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MEEMLMAGNA NLNQNPNPPP AAPSAPGAQR AGAPAAVAAA PPSAGATGGA GPERRARPQK 60 EKALNCPRCN STNTKFCYYN NYSLQQPRYF CKTCRRYWTE GGSLRNVPVG GGSRKNKRSS 120 SAVSSAAAAA AASTSAAMSG TVPVGLAAKN PKLMHEGAHD LNLAFPHHNG RALQPPEFPA 180 FPSLESSSVC NPGAAMLGNG AAGRGMGALS GLELLRSTGC YVPLQHFQLG MPAEYAAAGF 240 SLGEFRVPPP PQSQSVFGFS LDTHGTGGVG GAGGYSAGLQ ESAAGRMLFP FEDLKPAVSA 300 AGGGASNGAD HHHYEHSKDQ AAGDGGGASG VTGGHEAPAG FWSNSMIGNG SSNGGGGSW

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MEEMLMAGNA NLNQNPNPPP AAPSAPGAQR AGAPAAVAAA PPSAGATGGA GPERRARPQK  60
EKALNCPRCN STNTKFCYYN NYSLQQPRYF CKTCRRYWTE GGSLRNVPVG GGSRKNKRSS  120
SAVSSAAAAA AASTSAAMSG TVPVGLAAKN PKLMHEGAHD LNLAFPHHNG RALQPPEFPA  180
FPSLESSSVC NPGAAMLGNG AAGRGMGALS GLELLRSTGC YVPLQHFQLG MPAEYAAAGF  240
SLGEFRVPPP PQSQSVFGFS LDTHGTGGVG GAGGYSAGLQ ESAAGRMLFP FEDLKPAVSA  300
AGGGASNGAD HHHYEHSKDQ AAGDGGGASG VTGGHEAPAG FWSNSMIGNG SSNGGGGSW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.124664	0.0	sheath

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G171852

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after imbibition. {ECO:0000269\|PubMed:11470159}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G171852_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726996	0.0	KJ726996.1 Zea mays clone pUT3968 C2C2-DOF transcription factor (DOF22) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001142794.1	0.0	uncharacterized protein LOC100275168
Refseq	XP_008681604.1	0.0	uncharacterized protein LOC100275168 isoform X3
Refseq	XP_020408786.1	0.0	uncharacterized protein LOC100275168 isoform X1
Swissprot	B9F1L8	1e-119	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	B6SPI7	0.0	B6SPI7_MAIZE; C2C2-DOF transcription factor
STRING	GRMZM2G171852_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-36	Dof family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G171852_P01
Entrez Gene	100275168

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Alexandrov NN, et al. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol., 2009. 69(1-2): p. 179-94 [PMID:18937034]