PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G171818_P02
Common NameLOC100285905
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 384aa    MW: 40335.9 Da    PI: 9.3418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G171818_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.4e-08288364455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...........................TTS-.STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkas........................kapskK.lsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +s                          +  K   Ka +L + ++Y++sLq
  GRMZM2G171818_P02 288 SHSLAERVRREKISERMKLLQDLVPGCSkvskhrrpllkirlkthayfnfqrLLDLVKvTGKAVMLDEIINYVQSLQ 364
                        8*************************999***********************777777799**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.14E-8282368No hitNo description
PROSITE profilePS5088814.424284363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-11284312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-5288364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-11288369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-8290369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-11340372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0001052developmental stagevascular leaf expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSSRTHHPCF ASVESWEQAA MAHDGFLGDL ACPLPLAHAA TAAPFDPLRV HVAHALTGAG  60
AGWEHDAATG ALVPSRPRPL SPSSLAAATA VVVGGGGDAV EAALMEQLAS RLGVSVPSPP  120
PSRYASCHGT PAGSPSKSAA PWVLAGDAAP AERATGLPCF PASCGELSRV PSCQSSLLGE  180
HAPTPAPAPL PGAAKQHASD GSCSDGPCRK RKASGGKAKD VVTTATPKSR EPETMAKRRK  240
LSTDAARDEA GSHGNGKGKE VAPAAEPEPQ PPKDYIHVRA RRGQATDSHS LAERVRREKI  300
SERMKLLQDL VPGCSKVSKH RRPLLKIRLK THAYFNFQRL LDLVKVTGKA VMLDEIINYV  360
QSLQCQVEVR AYDLHSALSA LLRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.283450.0root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G171818
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G171818_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745730.0EU974573.1 Zea mays clone 453265 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020403395.10.0BHLH transcription factor isoform X1
TrEMBLA0A1D6F5G20.0A0A1D6F5G2_MAIZE; BHLH transcription factor
STRINGGRMZM2G171818_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-35bHLH family protein