PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G171468_P01
Common NameIDP150
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 362aa    MW: 38387 Da    PI: 5.1564
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G171468_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.21.4e-31229284156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+peLH+rFv a+++LGG+++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  GRMZM2G171468_P01 229 KARRCWSPELHRRFVAALHELGGPQVATPKQIREVMQVDGLTNDEVKSHLQKYRLH 284
                        68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-28226287IPR009057Homeodomain-like
PROSITE profilePS5129414.767226286IPR017930Myb domain
SuperFamilySSF466898.06E-16227287IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-25229284IPR006447Myb domain, plants
PfamPF002498.9E-8231282IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGLDVGEIGM GLDLGLDLRL FAARSAGGMA KGAAPAGIQS CIRSLEVERR KIEVFRRELP  60
LCLRLLADVI DELKEEAAKR GEYDDGAATV DDGDKRKWMS TAQLWVDSDA KSDESDKEQQ  120
SEITSPPEPK LLGGGAPTPI RAAVSAVAVP QPLPPPLFRR EDSSASSGLS LVSLSPATKA  180
AVPISPPVVA ASGTGTASAR FCGTTMPPCG SEVNNMHSQA QQQQQASRKA RRCWSPELHR  240
RFVAALHELG GPQVATPKQI REVMQVDGLT NDEVKSHLQK YRLHNRRSSP GAAAAPVSQS  300
IMLVDGVWAA QEQSSGSQSG SRQGPLQFSR AGMAVGGGDD SSSSDDDEDD DKSEDGYSLK  360
CV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-14229282154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-14229282154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-14229282154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-14229282154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.190760.0cell culture| ear| endosperm| meristem| shoot| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G171468
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G171468_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9744990.0EU974499.1 Zea mays clone 450772 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146647.10.0uncharacterized LOC100280246
TrEMBLB6UB840.0B6UB84_MAIZE; DNA binding protein
STRINGGRMZM2G171468_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Representative plantOGRP25631133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.15e-32G2-like family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]