PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G171428_P02 | ||||||||
Common Name | ZEAMMB73_024069, Zm.10430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 412aa MW: 43646.9 Da PI: 6.9705 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.2 | 1.2e-31 | 212 | 268 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK vkg e+prsYY+Ct+++Cpvkkkversa ++++++i+Y+g+Hnh+ GRMZM2G171428_P02 212 DDGYNWRKYGQKAVKGGEYPRSYYKCTHTSCPVKKKVERSA-EGHITQIIYRGQHNHQ 268 8****************************************.***************8 PP | |||||||
2 | WRKY | 36.2 | 1.2e-11 | 380 | 402 | 1 | 23 |
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYGqK+vkg+++pr GRMZM2G171428_P02 380 LDDGYRWRKYGQKVVKGNPYPRT 402 59********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-28 | 208 | 270 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-25 | 210 | 270 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-33 | 211 | 269 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.319 | 212 | 270 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-24 | 212 | 268 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.1E-13 | 367 | 402 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-10 | 372 | 402 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.008 | 375 | 403 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-4 | 380 | 410 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-7 | 381 | 402 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MAAREASAPA PASPHAGDGP GRPPRPTLAL PPRSAVESLF ATGASSSAGA AETSPGPLTL 60 AAALFPDASS PAFHGSFTQL LVGAIGSPAV PSPPSPFAVP PGLSPATLFG SPGLFSPTGS 120 FEMSHQQALA QVTAQAVHSQ YNMINHTDYS IPFSSTTAPA LITAQHANSS ANVASAQEKP 180 ALPSHAGNSN IESNEVSQGL KTSAPTFDKP ADDGYNWRKY GQKAVKGGEY PRSYYKCTHT 240 SCPVKKKVER SAEGHITQII YRGQHNHQRP PKRRSKDGGG PLNEADVLHE NEDISTRSEP 300 GSQEHSGKHE GSNDGILGPS VSRRGGGDEQ LSGSSDSDEE QDDEQRAGDE DPGYANANKR 360 HVPTPAQRII VQTNSEVDLL DDGYRWRKYG QKVVKGNPYP RTHKLWNYNS LP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-16 | 212 | 271 | 15 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 268 | 273 | RPPKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.16068 | 0.0 | ear| endosperm| meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G171428 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G171428_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957724 | 0.0 | EU957724.1 Zea mays clone 1612894 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020400022.1 | 0.0 | probable WRKY transcription factor 4 isoform X2 | ||||
TrEMBL | K7VL66 | 0.0 | K7VL66_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G171428_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 2e-54 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G171428_P02 |