PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G171370_P03
Common NameLOC100284949, Zm.75910
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 371aa    MW: 38750.6 Da    PI: 7.3668
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G171370_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.92.3e-23254316163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+ L++eN+aL+ el++l+k ++ +++e+
  GRMZM2G171370_P03 254 ERELKRERRKQSNRESARRSRLRKQQECEELARKVADLTTENSALRAELDNLRKACQDMEAEN 316
                        89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165965.9E-7122231No hitNo description
Gene3DG3DSA:1.20.5.1709.2E-17249313No hitNo description
SMARTSM003382.4E-22254318IPR004827Basic-leucine zipper domain
PfamPF001707.7E-21254316IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.219256319IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.69E-11257312No hitNo description
CDDcd147021.21E-21259310No hitNo description
PROSITE patternPS000360261276IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MASSSDEQPK PPEPPAAAVV AAPPQTHAEW AASLQAYYAA AGHPYAWPAQ HLMAAAAAGA  60
PFGTPVPFPV YHPGAAAAYY AHASMAAGVP YPTSEAVATV AAATAPEGKG KGKGGGASPE  120
KGSSGAPSGE DDSRSSDSGS DESSETRDDD TDHKGSSAPK KRKSGNTSAE GEPSQAAVVR  180
YATVESPYPA KGRSASKLPV SAPGRAALPS ATPNLNIGMD IWNTSPALAV PAVQGEANPG  240
LALARRDSVT QLDERELKRE RRKQSNRESA RRSRLRKQQE CEELARKVAD LTTENSALRA  300
ELDNLRKACQ DMEAENSRLL VSTVPSVTTT LGMSIEPPKA QQHHDDEGQL HKKSSNNSNG  360
KGSHKPEANT R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270276RRSRLRK
2270277RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.759100.0ear| embryo| meristem| ovary| pericarp| pollen| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G171370
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G171370_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9702430.0EU970243.1 Zea mays clone 342575 DNA-binding protein EMBP-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668105.10.0DNA-binding protein EMBP-1 isoform X2
SwissprotP250328e-64EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A1D6ELA40.0A0A1D6ELA4_MAIZE; G-box-binding factor 1
STRINGGRMZM2G171370_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Representative plantOGRP1275345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.13e-20basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]